Introduction

This page provides the release notes associated with OpenVal.

On This Page: 

OpenVal2026.03.01

Release Date: 2026-06-12

“June 2026 Minor Release”

This is a minor release of OpenVal that builds on the March 2026 major release and includes additional R packages.

  • Total packages: 616
  • R version: 4.5.2
  • Bioconductor version: 3.22
  • Package snapshot date: 2025-12-02

New

  • 39 new packages:
Package Name Version
admiraldev 1.3.1
afex 1.5.0
AsioHeaders 1.30.2.1
broom.helpers 1.22.0
brulee 0.6.0
bs4Dash 2.3.5
chromote 0.5.1
chron 2.3.62
common 1.1.3
condformat 0.10.1
crew 1.3.0
crew.cluster 0.4.0
flowchart 1.0.0
fmtr 1.7.0
fontBitstreamVera 0.1.1
fontLiberation 0.1.0
fontquiver 0.2.1
future.callr 0.10.2
gdtools 0.4.4
gtreg 0.4.2
histoslider 0.1.1
kknn 1.4.1
latex2exp 0.9.6
lava 1.8.2
libr 1.3.9
mrgsolve 1.6.1
nanotime 0.3.12
otel 0.2.0
plumber 1.3.0
qs2 0.1.6
rintrojs 0.3.4
rio 1.2.4
rtables.officer 0.1.1
shinybusy 0.3.3
shinydashboardPlus 2.0.6
snowflakeauth 0.2.0
sparkline 2
vcdExtra 0.8.6
webshot2 0.1.2

Updated

  • 0 packages with version updates.

Removed

  • 3 removed packages:
Package Name Reason
assertive The package is not actively maintained. Additionally, it relies on a complex web of dependencies, including several archived packages, which introduces increased maintenance risk and complicates validation, leading to its removal.
assertive.types The package is not actively maintained. Additionally, it relies on a complex web of dependencies, including several archived packages, which introduces increased maintenance risk and complicates validation, leading to its removal.
norm2 The package is not actively maintained, and user issues are not being monitored. Open issues on the project's repository remain unacknowledged by the author, indicating a lack of ongoing support and increasing long-term maintenance risk, leading to its removal.

New Dependencies

  • 13 new dependency packages:
Package Name Version
collections 0.3.9
coro 1.1.0
gnm 1.1-5
qvcalc 1.0.4
RcppCCTZ 0.2.13
RcppDate 0.0.6
relimp 1.0-5
safetensors 0.2.0
sodium 1.4.0
swagger 5.17.14.1
torch 0.16.3
waiter 0.2.5.1
webutils 1.2.2

Updated Dependencies

  • 0 dependency package with version updates.

Removed Dependencies

  • 14 removed dependency packages:
Package Name Version
assertive.base N/A
assertive.code N/A
assertive.data N/A
assertive.data.uk N/A
assertive.data.us N/A
assertive.datetimes N/A
assertive.files N/A
assertive.matrices N/A
assertive.models N/A
assertive.numbers N/A
assertive.properties N/A
assertive.reflection N/A
assertive.sets N/A
assertive.strings N/A

Former Dependencies Added to OpenVal

These packages were formerly dependency packages, but as of this release they have been validated and included as new packages in OpenVal.

  • 17 dependency packages added to OpenVal:
Package Name Version
admiraldev 1.3.1
afex 1.5.0
AsioHeaders 1.30.2.1
chromote 0.5.1
chron 2.3.62
common 1.1.3
fmtr 1.7.0
fontBitstreamVera 0.1.1
fontLiberation 0.1.0
fontquiver 0.2.1
gdtools 0.4.4
lava 1.8.2
otel 0.2.0
qs2 0.1.6
rio 1.2.4
shinybusy 0.3.3
snowflakeauth 0.2.0

OpenVal2026.03.00

Release Date: 2026-03-13

“March 2026 Major Release”

This is a major release of OpenVal that builds on the December 2025 minor release and includes an updated R version, updated snapshot date, and additional R packages.

  • Total packages: 580
  • R version: 4.5.2
  • Bioconductor version: 3.22
  • Package snapshot date: 2025-12-02

New

  • 49 new packages:
Package Name Version
babelmixr2 0.1.11
BayesianMCPMod 1.2.0
BH 1.87.0.1
biomaRt 2.66.0
brew 1.0.10
broom.mixed 0.2.9.6
cards 0.7.0
cardx 0.3.0
clinify 0.3.0
distributional 0.5.0
envsetup 0.3.0
gestate 1.6.0
ggridges 0.5.7
ggstats 0.11.0
gsDesign 3.7.0
inline 0.3.21
iterators 1.0.14
jsonvalidate 1.5.0
loo 2.8.0
matrixStats 1.5.0
mvnfast 0.2.8
PKNCA 0.12.1
polyclip 1.10.7
posterior 1.6.1
precrec 0.14.5
pROC 1.19.0.1
QuickJSR 1.8.1
R.cache 0.17.0
R.methodsS3 1.8.2
R.oo 1.27.1
r2d3 0.2.6
RBesT 1.8.2
RcppParallel 5.1.11.1
RobinCar 1.0.0
RPostgres 1.4.8
rstantools 2.5.0
sdtmchecks 1.0.0
shinyFeedback 0.4.0
shinythemes 1.2.0
StanHeaders 2.32.10
survivalSL 0.98
tensorA 0.36.2.1
thematic 0.1.8
tidytext 0.4.3
tweenr 2.0.3
vcd 1.4.13
vegawidget 0.5.0
workflows 1.3.0
workflowsets 1.1.1

Updated

  • 233 packages with version updates:
Package Name Version Old -> New
admiral 1.2 -> 1.3.1
admiralonco 1.2 -> 1.3
admiralophtha 1.2 -> 1.3
admiralpeds 0.2 -> 0.2.1
admiralvaccine 0.4 -> 0.5
anytime 0.3.11 -> 0.3.12
aws.s3 0.3.21 -> 0.3.22
base 4.5 -> 4.5.2
bayesplot 1.12 -> 1.14
BiocManager 1.30.25 -> 1.30.27
bookdown 0.43 -> 0.45
boot 1.3.31 -> 1.3.32
brms 2.22 -> 2.23
broom 1.0.8 -> 1.0.1
BuyseTest 3.2 -> 3.3.4
Cairo 1.6.2 -> 1.7
CBPS 0.23 -> 0.24
checkmate 2.3.2 -> 2.3.3
chevron 0.2.11 -> 0.2.12
clusterProfiler 4.16 -> 4.18.2
colorspace 2.1.1 -> 2.1.2
commonmark 1.9.5 -> 2.0
compiler 4.5 -> 4.5.2
corrr 0.4.4 -> 0.4.5
covr 3.6.4 -> 3.6.5
cowplot 1.1.3 -> 1.2
credentials 2.0.2 -> 2.0.3
crosstable 0.8.1 -> 0.8.2
crosstalk 1.2.1 -> 1.2.2
curl 6.2.2 -> 7.0
DALEX 2.4.3 -> 2.5.3
data.table 1.17.2 -> 1.17.8
datasets 4.5 -> 4.5.2
dbplyr 2.5 -> 2.5.1
Deriv 4.1.6 -> 4.2
devtools 2.4.5 -> 2.4.6
dials 1.4 -> 1.4.2
diffdf 1.1.1 -> 1.1.2
digest 0.6.37 -> 0.6.39
doBy 4.6.26 -> 4.7
doFuture 1.0.2 -> 1.1.2
DoseFinding 1.3.1 -> 1.4.1
downlit 0.4.4 -> 0.4.5
DT 0.33 -> 0.34
dtplyr 1.3.1 -> 1.3.2
dunlin 0.1.1 -> 0.1.12
emmeans 1.11.1 -> 2.0
epiR 2.0.83 -> 2.0.88
evaluate 1.0.3 -> 1.0.5
exact2x2 1.6.9 -> 1.7
fansi 1.0.6 -> 1.0.7
fitdistrplus 1.2.2 -> 1.2.4
flextable 0.9.7 -> 0.9.1
FME 1.3.6.3 -> 1.3.6.4
forcats 1.0 -> 1.0.1
forestplot 3.1.6 -> 3.1.7
fresh 0.2.1 -> 0.2.2
future 1.49 -> 1.68
gam 1.22.5 -> 1.22.6
gargle 1.5.2 -> 1.6
geepack 1.3.12 -> 1.3.13
gemtc 1.0.2 -> 1.1
gert 2.1.5 -> 2.2
GGally 2.2.1 -> 2.4
gganimate 1.0.9 -> 1.0.11
ggbeeswarm 0.7.2 -> 0.7.3
ggExtra 0.10.1 -> 0.11
ggforce 0.4.2 -> 0.5
ggfortify 0.4.17 -> 0.4.19
ggh4x 0.3 -> 0.3.1
ggiraph 0.8.13 -> 0.9.2
ggmcmc 1.5.1.1 -> 1.5.1.2
ggnewscale 0.5.1 -> 0.5.2
ggpattern 1.1.4 -> 1.2.1
ggplot2 3.5.2 -> 4.0.1
ggpmisc 0.6.1 -> 0.6.3
ggPMX 1.2.11 -> 1.3.2
ggpubr 0.6 -> 0.6.2
ggstatsplot 0.13.1 -> 0.13.3
ggsurvfit 1.1 -> 1.2
ggthemes 5.1 -> 5.2
gh 1.4.1 -> 1.5
glmnet 4.1.8 -> 4.1.1
Gmisc 3.0.3 -> 3.0.4
googledrive 2.1.1 -> 2.1.2
googlesheets4 1.1.1 -> 1.1.2
gplots 3.2 -> 3.3
graphics 4.5 -> 4.5.2
grDevices 4.5 -> 4.5.2
grid 4.5 -> 4.5.2
gt 1.0 -> 1.1
gtsummary 2.2 -> 2.4
hardhat 1.4.1 -> 1.4.2
haven 2.5.4 -> 2.5.5
here 1.0.1 -> 1.0.2
Hmisc 5.2.3 -> 5.2.4
hms 1.1.3 -> 1.1.4
httr2 1.1.2 -> 1.2.1
huxtable 5.6 -> 5.8
IDEAFilter 0.2 -> 0.2.1
igraph 2.1.4 -> 2.2.1
keras 2.15 -> 2.16
keyring 1.3.2 -> 1.4.1
labelled 2.14.1 -> 2.16
later 1.4.2 -> 1.4.4
lemon 0.5 -> 0.5.2
lintr 3.2 -> 3.3.0.1
litedown 0.7 -> 0.8
lotri 1.0 -> 1.0.2
maftools 2.24 -> 2.26
magick 2.8.6 -> 2.9
magrittr 2.0.3 -> 2.0.4
Matrix 1.7.3 -> 1.7.4
mediation 4.5 -> 4.5.1
meta 8.1 -> 8.2.1
metacore 0.1.3 -> 0.2.1
metatools 0.1.6 -> 0.2
methods 4.5 -> 4.5.2
mgcv 1.9.3 -> 1.9.4
mice 3.17 -> 3.18
mirt 1.44 -> 1.45.1
mlr3 0.23 -> 1.2
mlr3learners 0.12 -> 0.13
mlr3mbo 0.2.9 -> 0.3.3
mlr3pipelines 0.7.2 -> 0.10
mlr3tuning 1.3 -> 1.5
mmrm 0.3.14 -> 0.3.15
mockery 0.4.4 -> 0.4.5
multcomp 1.4.28 -> 1.4.29
nonmem2rx 0.1.6 -> 0.1.9
odbc 1.6.1 -> 1.6.3
officedown 0.4 -> 0.4.1
officer 0.6.1 -> 0.7.1
openssl 2.3.2 -> 2.3.4
openxlsx 4.2.8 -> 4.2.8.1
org.Hs.eg.db 3.21 -> 3.22
packrat 0.9.2 -> 0.9.3
pagedown 0.22 -> 0.23
parallel 4.5 -> 4.5.2
parsnip 1.3.1 -> 1.4
patchwork 1.3 -> 1.3.2
pathview 1.48 -> 1.50
pbkrtest 0.5.4 -> 0.5.5
pharmaverseadam 1.1 -> 1.2
pharmaversesdtm 1.2 -> 1.3.1
pillar 1.10.2 -> 1.11.1
pkgbuild 1.4.7 -> 1.4.8
pkgdown 2.1.2 -> 2.2
pkgload 1.4 -> 1.4.1
PKI 0.1.14 -> 0.1.15
plotly 4.10.4 -> 4.11
plotrix 3.8.4 -> 3.8.13
promises 1.3.2 -> 1.5
psych 2.5.3 -> 2.5.6
purrr 1.0.4 -> 1.2
quarto 1.4.4 -> 1.5.1
r2rtf 1.1.4 -> 1.2
ragg 1.4 -> 1.5
randomForestSRC 3.3.3 -> 3.4.5
ratesci 0.5 -> 1.0
rbibutils 2.3 -> 2.4
rbmi 1.4.1 -> 1.5.2
rcompanion 2.5 -> 2.5.1
Rcpp 1.0.14 -> 1.1
RcppArmadillo 14.4.2.1 -> 15.2.2.1
reactable 0.4.4 -> 0.4.5
readr 2.1.5 -> 2.1.6
readtext 0.91 -> 0.92.1
recipes 1.3 -> 1.3.1
reformulas 0.4.1 -> 0.4.2
renv 1.1.4 -> 1.1.5
reporter 1.4.4 -> 1.4.5
reshape 0.8.9 -> 0.8.1
reshape2 1.4.4 -> 1.4.5
reticulate 1.42 -> 1.44.1
rmarkdown 2.29 -> 2.3
rms 8.0 -> 8.1
roxygen2 7.3.2 -> 7.3.3
rpart.plot 3.1.2 -> 3.1.3
rprojroot 2.0.4 -> 2.1.1
rsample 1.3 -> 1.3.1
rsconnect 1.4.2 -> 1.6.2
Rsolnp 1.16 -> 2.0.1
RSQLite 2.3.11 -> 2.4.5
rtables 0.6.13 -> 0.6.14
rversions 2.1.2 -> 3.0
rvest 1.0.4 -> 1.0.5
rxode2 3.0.4 -> 5.0
S7 0.2 -> 0.2.1
sdtm.oak 0.1.1 -> 0.2
selectr 0.4.2 -> 0.5
sf 1.0.21 -> 1.0.23
shapr 1.0.4 -> 1.0.6
shapviz 0.9.7 -> 0.10.3
shiny 1.10 -> 1.11.1
sjPlot 2.8.17 -> 2.9
skimr 2.1.5 -> 2.2.1
spelling 2.3.1 -> 2.3.2
splines 4.5 -> 4.5.2
stats 4.5 -> 4.5.2
stats4 4.5 -> 4.5.2
stringr 1.5.1 -> 1.6
styler 1.10.3 -> 1.11
survey 4.4.2 -> 4.4.8
survminer 0.5 -> 0.5.1
svglite 2.2.1 -> 2.2.2
systemfonts 1.2.3 -> 1.3.1
table1 1.4.3 -> 1.5.1
tcltk 4.5 -> 4.5.2
tern.mmrm 0.3.2 -> 0.3.3
testthat 3.2.3 -> 3.3.1
textshaping 1.0.1 -> 1.0.4
tibble 3.2.1 -> 3.3
tidycmprsk 1.1 -> 1.1.1
tidymodels 1.3 -> 1.4.1
tinytex 0.57 -> 0.58
tools 4.5 -> 4.5.2
tufte 0.13 -> 0.14
tune 1.3 -> 2.0.1
usethis 3.1 -> 3.2.1
utf8 1.2.5 -> 1.2.6
utils 4.5 -> 4.5.2
V8 6.0.3 -> 8.0.1
vetiver 0.2.5 -> 0.2.6
vroom 1.6.5 -> 1.6.7
waldo 0.6.1 -> 0.6.2
xfun 0.52 -> 0.54
XML 3.99.0.18 -> 3.99.0.2
xml2 1.3.8 -> 1.5.1
xportr 0.4.2 -> 0.4.3
xpose 0.4.19 -> 0.4.22
xpose4 4.7.3 -> 4.7.4
yaml 2.3.1 -> 2.3.11

Removed

  • 2 removed packages:
Package Name Reason
qs The package relies on deprecated internal R serialization APIs that no longer function correctly in recent R versions. The authors have indicated no plans to update or maintain compatibility, leading to its removal.
tern.rbmi All functions in the package are marked as experimental, and the package has been archived from CRAN, increasing maintenance and validation risk and making reliable testing and long-term support impractical for now, leading to its removal.

New Dependencies

  • 42 new dependency packages:
Package Name Version
AIPW 0.6.9.2
binom 1.1-1.1
BiocFileCache 3.0.0
cubature 2.1.4-1
date 1.2-42
emulator 1.2-24
envnames 0.4.1
ggformula 1.0.0
hdnom 6.1.0
janeaustenr 1.0.0
kernelshap 0.9.1
kernlab 0.9-33
lbfgsb3c 2024-3.5
lsoda 1.2
mixtools 2.0.0.1
monolix2rx 0.0.6
mosaic 1.9.2
mosaicCore 0.9.5
mosaicData 0.20.4
n1qn1 6.0.1-12
ncvreg 3.16.0
nlmixr2data 2.0.9
nlmixr2est 5.0.2
nlmixr2extra 5.0.0
nlmixr2plot 5.0.0
otel 0.2.0
pammtools 0.7.3
pec 2025.06.24
penalized 0.9-53
qs2 0.1.6
relsurv 2.3-3
RISCA 1.0.7
scam 1.2-20
segmented 2.1-4
Seqinfo 1.0.0
SnowballC 0.7.1
snowflakeauth 0.2.0
survivalPLANN 0.4
symengine 0.2.10
tailor 0.1.0
tokenizers 0.3.0
xgxr 1.1.2

Updated Dependencies

  • 121 dependency package with version updates:
Package Name Version Old -> New
admiraldev 1.2.0 -> 1.3.1
admisc 0.38 -> 0.39
afex 1.4-1 -> 1.5-0
AnnotationDbi 1.70.0 -> 1.72.0
aplot 0.2.5 -> 0.2.9
assertive.code 0.0-4 -> 0.0-3
bayestestR 0.15.3 -> 0.17.0
bbotk 1.5.0 -> 1.8.1
Biobase 2.68.0 -> 2.70.0
BiocGenerics 0.54.0 -> 0.56.0
BiocParallel 1.42.0 -> 1.44.0
Biostrings 2.76.0 -> 2.78.0
bridgesampling 1.1-2 -> 1.2-1
butcher 0.3.5 -> 0.3.6
CompQuadForm 1.4.3 -> 1.4.4
correlation 0.8.7 -> 0.8.8
cpp11armadillo 0.5.0 -> 0.5.4
data.tree 1.1.0 -> 1.2.0
datawizard 1.1.0 -> 1.3.0
dcurver 0.9.2 -> 0.9.3
dendextend 1.19.0 -> 1.19.1
DNAcopy 1.82.0 -> 1.84.0
DOSE 4.2.0 -> 4.4.0
effectsize 1.0.0 -> 1.0.1
elliptic 1.4-0 -> 1.5-1
enrichplot 1.28.2 -> 1.30.3
exactci 1.4-4 -> 1.4-5
extrafont 0.19 -> 0.20
extrafontdb 1.0 -> 1.1
FactoMineR 2.11 -> 2.12
fgsea 1.34.0 -> 1.36.0
fmtr 1.6.8 -> 1.7.0
future.apply 1.11.3 -> 1.20.0
gdtools 0.4.2 -> 0.4.4
ggeffects 2.2.1 -> 2.3.1
ggfun 0.1.8 -> 0.2.0
ggplotify 0.1.2 -> 0.1.3
ggpp 0.5.8-1 -> 0.5.9
ggsci 3.2.0 -> 4.1.0
ggside 0.3.1 -> 0.4.1
ggtangle 0.0.6 -> 0.0.9
ggtree 3.16.0 -> 4.0.1
gld 2.6.7 -> 2.6.8
GlobalOptions 0.1.2 -> 0.1.3
GO.db 3.21.0 -> 3.22.0
GOSemSim 2.34.0 -> 2.36.0
graph 1.86.0 -> 1.88.0
infer 1.0.8 -> 1.0.9
insight 1.2.0 -> 1.4.3
IRanges 2.42.0 -> 2.44.0
JavaGD 0.6-5 -> 0.6-6
KEGGgraph 1.68.0 -> 1.70.0
KEGGREST 1.48.0 -> 1.50.0
KMsurv 0.1-5 -> 0.1-6
kSamples 1.2-10 -> 1.2-12
lava 1.8.1 -> 1.8.2
learnr 0.11.5 -> 0.11.6
lgr 0.4.4 -> 0.5.0
listenv 0.9.1 -> 0.10.0
lobstr 1.1.2 -> 1.1.3
maps 3.4.2.1 -> 3.4.3
MatchIt 4.7.1 -> 4.7.2
mathjaxr 1.8-0 -> 2.0-0
mclust 6.1.1 -> 6.1.2
mets 1.3.6 -> 1.3.8
mlr3measures 1.0.0 -> 1.2.0
mlr3misc 0.17.0 -> 0.19.0
modeldata 1.4.0 -> 1.5.1
parallelly 1.44.0 -> 1.45.1
parameters 0.25.0 -> 0.28.3
pbapply 1.7-2 -> 1.7-4
pdftools 3.5.0 -> 3.6.0
performance 0.13.0 -> 0.15.3
permute 0.9-7 -> 0.9-8
pheatmap 1.0.12 -> 1.0.13
progressr 0.15.1 -> 0.18.0
Publish 2023.01.17 -> 2025.07.24
qpdf 1.3.5 -> 1.4.1
quantmod 0.4.27 -> 0.4.28
qvalue 2.40.0 -> 2.42.0
R2WinBUGS 2.1-22.1 -> 2.1-23
Rgraphviz 2.52.0 -> 2.54.0
Rhtslib 3.4.0 -> 3.6.0
rio 1.2.3 -> 1.2.4
riskRegression 2025.05.15 -> 2025.09.17
Rmpfr 1.1-0 -> 1.1-2
rstatix 0.7.2 -> 0.7.3
rstpm2 1.6.7 -> 1.7.1
Rttf2pt1 1.3.12 -> 1.3.14
rvg 0.3.5 -> 0.4.0
s2 1.1.8 -> 1.1.9
S4Vectors 0.46.0 -> 0.48.0
saemix 3.3 -> 3.4
scatterpie 0.2.4 -> 0.2.6
seriation 1.5.7 -> 1.5.8
SimDesign 2.19.2 -> 2.21
sjmisc 2.8.10 -> 2.8.11
sjstats 0.19.0 -> 0.19.1
slider 0.3.2 -> 0.3.3
sparsevctrs 0.3.3 -> 0.3.4
statmod 1.5.0 -> 1.5.1
statsExpressions 1.7.0 -> 1.7.1
stringfish 0.16.0 -> 0.17.0
tensorflow 2.16.0 -> 2.20.0
terra 1.8-50 -> 1.8-86
tfruns 1.5.3 -> 1.5.4
TH.data 1.1-3 -> 1.1-5
timeDate 4041.110 -> 4051.111
timereg 2.0.6 -> 2.0.7
TMB 1.9.17 -> 1.9.18
treeio 1.32.0 -> 1.34.0
TSP 1.2-4 -> 1.2.6
units 0.8-7 -> 1.0-0
vegan 2.6-10 -> 2.7-2
visNetwork 2.1.2 -> 2.1.4
warp 0.2.1 -> 0.2.2
WRS2 1.1-6 -> 1.1-7
xlsxjars 0.6.1 -> 0.9.0
XVector 0.48.0 -> 0.50.0
yulab.utils 0.2.0 -> 0.2.2
zeallot 0.1.0 -> 0.2.0

Removed Dependencies

  • 11 removed dependency packages:
Package Name Version
forecast NA
fracdiff NA
GenomeInfoDb NA
GenomeInfoDbData NA
kknn NA
pak NA
RApiSerialize NA
sodium NA
UCSC.utils NA
urca NA
zlibbioc NA

Former Dependencies Added to OpenVal

These packages were formerly dependency packages, but as of this release they have been validated and included as new packages in OpenVal.

  • 24 dependency packages added to OpenVal:
Package Name Version
BH 1.87.0.1
brew 1.0.10
cards 0.7.0
distributional 0.5.0
ggridges 0.5.7
ggstats 0.11.0
inline 0.3.21
iterators 1.0.14
loo 2.8.0
matrixStats 1.5.0
polyclip 1.10.7
posterior 1.6.1
pROC 1.19.0.1
QuickJSR 1.8.1
R.cache 0.17.0
R.methodsS3 1.8.2
R.oo 1.27.1
RcppParallel 5.1.11.1
rstantools 2.5.0
StanHeaders 2.32.10
tensorA 0.36.2.1
tweenr 2.0.3
workflows 1.3.0
workflowsets 1.1.1

OpenVal2025.09.01

Release Date: 2025-12-15

“December 2025 Minor Release”

This is a minor release of OpenVal that builds on the September 2025 major release and includes additional R packages.

  • Total packages: 533
  • R version: 4.5.0
  • Bioconductor version: 3.21
  • Package snapshot date: 2025-05-16

New

  • 19 new packages:
Package Name Version
admiralophtha 1.2.0
admiralpeds 0.2.0
admiralvaccine 0.4.0
epitools 0.5.10.1
Exact 3.3
exact2x2 1.6.9
fmsb 0.7.6
ini 0.3.1
longpower 1.0.27
magick 2.8.6
parsnip 1.3.1
pharmaverseadam 1.1.0
recipes 1.3.0
rmass2 0.0.0.2
rsample 1.3.0
rversions 2.1.2
S7 0.2.0
tune 1.3.0
xopen 1.0.1

Updated

  • 0 packages with version updates.

Removed

  • 0 removed packages.

New Dependencies

  • 7 new dependency packages:
Package Name Version
exactci 1.4-4
forecast 8.24.0
fracdiff 1.5-3
mirai 2.5.3
nanonext 1.7.2
ssanv 1.1
urca 1.3-4

Updated Dependencies

  • 0 dependency package with version updates.

Removed Dependencies

  • 4 removed dependency packages:
Package Name Version
BiocVersion NA
RTCGA NA
RTCGA.clinical NA
valtools NA

Former Dependencies Added to OpenVal

These packages were formerly dependency packages, but as of this release they have been validated and included as new packages in OpenVal.

  • 10 dependency packages added to OpenVal:
Package Name Version
Exact 3.3
ini 0.3.1
magick 2.8.6
parsnip 1.3.1
recipes 1.3.0
rsample 1.3.0
rversions 2.1.2
S7 0.2.0
tune 1.3.0
xopen 1.0.1

OpenVal2025.09.00

Release Date: 2025-09-12

“September 2025 Major Release”

This is a major release of OpenVal that builds on the June 2025 minor release and includes an updated R version, updated snapshot date, and additional R packages. Additionally, support for Ubuntu 24.04 has been added and support for Ubuntu 20.04 has been removed.

  • Total packages: 514
  • R version: 4.5.0
  • Bioconductor version: 3.21
  • Package snapshot date: 2025-05-16

New

  • 64 new packages:
Package Name Version
base64enc 0.1.3
bigD 0.3.1
billboarder 0.5.0
bit 4.6.0
bitops 1.0.9
chevron 0.2.11
clipr 0.8.0
clusterProfiler 4.16.0
compareDF 2.3.5
config 0.3.2
conflicted 1.2.0
curl 6.2.2
Deriv 4.1.6
dotenv 1.0.3
dtplyr 1.3.1
dunlin 0.1.10
fansi 1.0.6
formatters 0.5.11
Formula 1.2.5
ggiraphExtra 0.3.0
highr 0.11
jose 1.2.1
juicyjuice 0.1.0
labeling 0.4.3
litedown 0.7
MatrixModels 0.5.4
mime 0.13
modelr 0.1.11
nnls 1.6
openssl 2.3.2
org.Hs.eg.db 3.21.0
packrat 0.9.2
pathview 1.48.0
pins 1.4.1
PKI 0.1.14
praise 1.0.0
quantreg 6.1
rbibutils 2.3
RcppEigen 0.3.4.0.2
RcppTOML 0.2.3
Rdpack 2.6.4
reactR 0.6.1
reformulas 0.4.1
renv 1.1.4
reporter 1.4.4
Rsolnp 1.16
safetyGraphics 2.1.1
sdtm.oak 0.1.1
selectr 0.4.2
sf 1.0.21
shinytest2 0.4.1
shinyvalidate 0.1.3
sourcetools 0.1.7.1
SparseM 1.84.2
SuperLearner 2.0.29
sys 3.4.3
systemfonts 1.2.3
textshaping 1.0.1
timechange 0.3.0
utf8 1.2.5
uuid 1.2.1
V8 6.0.3
waldo 0.6.1
whisker 0.4.1

Updated

  • 194 packages with version updates.
Package Name Version Old -> New
admiral 1.1.1 -> 1.2.0
admiralonco 1.1.0 -> 1.2.0
anytime 0.3.9 -> 0.3.11
ARTool 0.11.1 -> 0.11.2
base 4.4.2 -> 4.5.0
bayesplot 1.11.1 -> 1.12.0
bit64 4.5.2 -> 4.6.0.1
bizdays 1.0.16 -> 1.0.17
bookdown 0.41 -> 0.43
broom 1.0.7 -> 1.0.8
bslib 0.8.0 -> 0.9.0
BuyseTest 3.0.5 -> 3.2.0
caret 6.0.94 -> 7.0.1
censored 0.3.2 -> 0.3.3
class 7.3.22 -> 7.3.23
cli 3.6.3 -> 3.6.5
cluster 2.1.6 -> 2.1.8.1
commonmark 1.9.2 -> 1.9.5
compiler 4.4.2 -> 4.5.0
cpp11 0.5.0 -> 0.5.2
data.table 1.16.2 -> 1.17.2
datasets 4.4.2 -> 4.5.0
depmixS4 1.5.0 -> 1.5.1
dials 1.3.0 -> 1.4.0
diffobj 0.3.5 -> 0.3.6
doBy 4.6.24 -> 4.6.26
doFuture 1.0.1 -> 1.0.2
doRNG 1.8.6 -> 1.8.6.2
DoseFinding 1.2.1 -> 1.3.1
emmeans 1.10.5 -> 1.11.1
epiR 2.0.76 -> 2.0.83
evaluate 1.0.1 -> 1.0.3
fastDummies 1.7.4 -> 1.7.5
fitdistrplus 1.2.1 -> 1.2.2
flexsurvcure 1.3.1 -> 1.3.3
fontawesome 0.5.2 -> 0.5.3
foreign 0.8.87 -> 0.8.90
forestplot 3.1.5 -> 3.1.6
fs 1.6.5 -> 1.6.6
future 1.34.0 -> 1.49.0
generics 0.1.3 -> 0.1.4
gert 2.1.4 -> 2.1.5
ggdist 3.3.2 -> 3.3.3
ggh4x 0.2.8 -> 0.3.0
ggiraph 0.8.10 -> 0.8.13
ggnewscale 0.5.0 -> 0.5.1
ggpattern 1.1.1 -> 1.1.4
ggplot2 3.5.1 -> 3.5.2
ggpmisc 0.6.0 -> 0.6.1
ggstatsplot 0.12.5 -> 0.13.1
graphics 4.4.2 -> 4.5.0
grDevices 4.4.2 -> 4.5.0
grid 4.4.2 -> 4.5.0
gt 0.11.1 -> 1.0.0
gtsummary 2.0.3 -> 2.2.0
hardhat 1.4.0 -> 1.4.1
Hmisc 5.2.0 -> 5.2.3
httpuv 1.6.15 -> 1.6.16
httr2 1.0.6 -> 1.1.2
huxtable 5.5.7 -> 5.6.0
igraph 2.1.1 -> 2.1.4
iml 0.11.3 -> 0.11.4
janitor 2.2.0 -> 2.2.1
jinjar 0.3.1 -> 0.3.2
jpeg 0.1.10 -> 0.1.11
jsonlite 1.8.9 -> 2.0.0
KernSmooth 2.23.24 -> 2.23.26
knitr 1.48 -> 1.50
labelled 2.13.0 -> 2.14.1
later 1.3.2 -> 1.4.2
lattice 0.22.6 -> 0.22.7
lemon 0.4.9 -> 0.5.0
lintr 3.1.2 -> 3.2.0
lme4 1.1.35.5 -> 1.1.37
logr 1.3.8 -> 1.3.9
logrx 0.3.1 -> 0.4.0
lubridate 1.9.3 -> 1.9.4
maftools 2.22.0 -> 2.24.0
markdown 1.13 -> 2.0
MASS 7.3.61 -> 7.3.65
Matrix 1.7.1 -> 1.7.3
meta 8.0.1 -> 8.1.0
metafor 4.6.0 -> 4.8.0
methods 4.4.2 -> 4.5.0
mgcv 1.9.1 -> 1.9.3
mice 3.16.0 -> 3.17.0
miniUI 0.1.1.1 -> 0.1.2
mirt 1.42 -> 1.44.0
mkin 1.2.6 -> 1.2.10
mlr3 0.21.1 -> 0.23.0
mlr3learners 0.8.0 -> 0.12.0
mlr3mbo 0.2.6 -> 0.2.9
mlr3pipelines 0.7.0 -> 0.7.2
mlr3tuning 1.1.0 -> 1.3.0
mlr3viz 0.10.0 -> 0.10.1
modeltools 0.2.23 -> 0.2.24
multcomp 1.4.26 -> 1.4.28
mvtnorm 1.3.2 -> 1.3.3
nestcolor 0.1.2 -> 0.1.3
networkD3 0.4 -> 0.4.1
nlme 3.1.166 -> 3.1.168
nloptr 2.1.1 -> 2.2.1
nnet 7.3.19 -> 7.3.20
nonmem2rx 0.1.5 -> 0.1.6
odbc 1.5.0 -> 1.6.1
officedown 0.3.3 -> 0.4.0
officer 0.6.7 -> 0.6.10
openxlsx 4.2.7.1 -> 4.2.8
pagedown 0.21 -> 0.22
pander 0.6.5 -> 0.6.6
parallel 4.4.2 -> 4.5.0
partykit 1.2.22 -> 1.2.24
pbkrtest 0.5.3 -> 0.5.4
pharmaversesdtm 1.1.0 -> 1.2.0
pillar 1.9.0 -> 1.10.2
pkgbuild 1.4.5 -> 1.4.7
pkgdown 2.1.1 -> 2.1.2
pkglite 0.2.3 -> 0.2.4
processx 3.8.4 -> 3.8.6
promises 1.3.0 -> 1.3.2
ps 1.8.1 -> 1.9.1
pspline 1.0.20 -> 1.0.21
psych 2.4.6.26 -> 2.5.3
purrr 1.0.2 -> 1.0.4
qs 0.27.2 -> 0.27.3
R.utils 2.12.3 -> 2.13.0
r2rtf 1.1.1 -> 1.1.4
R6 2.5.1 -> 2.6.1
ragg 1.3.3 -> 1.4.0
randomForestSRC 3.3.1 -> 3.3.3
ranger 0.16.0 -> 0.17.0
raster 3.6.30 -> 3.6.32
ratesci 0.4.0 -> 0.5.0
rbmi 1.3.0 -> 1.4.1
rcompanion 2.4.36 -> 2.5.0
Rcpp 1.0.13.1 -> 1.0.14
RcppArmadillo 14.0.2.1 -> 14.4.2.1
readxl 1.4.3 -> 1.4.5
reportr 1.3.0 -> 1.3.1
reticulate 1.39.0 -> 1.42.0
rjags 4.16 -> 4.17
rlang 1.1.4 -> 1.1.6
rlistings 0.2.9 -> 0.2.12
rms 6.8.2 -> 8.0.0
RODBC 1.3.23 -> 1.3.26
rpart 4.1.23 -> 4.1.24
RPostgreSQL 0.7.7 -> 0.7.8
rsconnect 1.3.2 -> 1.4.2
RSQLite 2.3.7 -> 2.3.11
rstan 2.32.6 -> 2.32.7
rtables 0.6.10 -> 0.6.13
runjags 2.2.2.4 -> 2.2.2.5
rxode2 3.0.2 -> 3.0.4
sass 0.4.9 -> 0.4.10
savvyr 0.1.1 -> 0.1.2
scales 1.3.0 -> 1.4.0
sessioninfo 1.2.2 -> 1.2.3
shapr 0.2.2 -> 1.0.4
shapviz 0.9.6 -> 0.9.7
shiny 1.9.1 -> 1.10.0
shinydashboard 0.7.2 -> 0.7.3
shinyWidgets 0.8.7 -> 0.9.0
sjPlot 2.8.16 -> 2.8.17
spatial 7.3.17 -> 7.3.18
splines 4.4.2 -> 4.5.0
stats 4.4.2 -> 4.5.0
stats4 4.4.2 -> 4.5.0
stringi 1.8.4 -> 1.8.7
survival 3.7.0 -> 3.8.3
svglite 2.1.3 -> 2.2.1
tcltk 4.4.2 -> 4.5.0
tern 0.9.6 -> 0.9.9
tern.rbmi 0.1.4 -> 0.1.5
testthat 3.2.1.1 -> 3.2.3
tidymodels 1.2.0 -> 1.3.0
tidytlg 0.1.5 -> 0.10.0
tinytex 0.54 -> 0.57
tools 4.4.2 -> 4.5.0
tzdb 0.4.0 -> 0.5.0
usethis 3.0.0 -> 3.1.0
utils 4.4.2 -> 4.5.0
vtable 1.4.7 -> 1.4.8
withr 2.5.2 -> 3.0.2
writexl 1.5.1 -> 1.5.4
xfun 0.49 -> 0.52
xgboost 1.7.8.1 -> 1.7.11.1
XML 3.99.0.17 -> 3.99.0.18
xml2 1.3.6 -> 1.3.8
xportr 0.4.1 -> 0.4.2
xpose 0.4.18 -> 0.4.19
xslt 1.4.6 -> 1.5.1
yardstick 1.3.1 -> 1.3.2
zip 2.3.1 -> 2.3.3
zoo 1.8.12 -> 1.8.14

Removed

  • 4 removed packages.
Package Name Reason
extrafont The package was archived on CRAN, is minimally maintained, and has reliability issues in restricted environments, making consistent validation and long-term support impractical, resulting in its removal.
Rmpi The package caused testing to hang in certain environments and relies on MPI libraries that are difficult to support consistently across platforms. Due to these issues and challenges with reliable validation, the package was removed.
rpact Key validation resources are behind a commercial paywall. Without access to these materials, we cannot independently validate the package, leading to its removal.
summarytools The package produced inconsistently formatted outputs when using standard rendering methods such as the RStudio `Knit` option, `rmarkdown::render()`, and when tested with {testthat}. These inconsistencies caused snapshot tests to change unexpectedly and triggered warnings not seen during manual runs. Due to this volatility and its impact on testing reliability, the package was removed.

New Dependencies

  • 58 new dependency packages:
Package Name Version
AnnotationDbi 1.70.0
ape 5.8-1
aplot 0.2.5
Biobase 2.68.0
BiocGenerics 0.54.0
BiocParallel 1.42.0
Biostrings 2.76.0
cvAUC 1.1.4
datamods 1.5.3
DOSE 4.2.0
enrichplot 1.28.2
extrafont 0.19
fastmatch 1.1-6
fgsea 1.34.0
fmtr 1.6.8
formatR 1.14
futile.logger 1.4.3
futile.options 1.0.1
GenomeInfoDb 1.44.0
GenomeInfoDbData 1.2.14
ggfun 0.1.8
ggplotify 0.1.2
ggtangle 0.0.6
ggtree 3.16.0
GO.db 3.21.0
GOSemSim 2.34.0
graph 1.86.0
gridGraphics 0.5-1
gson 0.1.0
IRanges 2.42.0
KEGGgraph 1.68.0
KEGGREST 1.48.0
kknn 1.4.1
lambda.r 1.2.4
learnr 0.11.5
mycor 0.1.1
phosphoricons 0.2.1
pingr 2.0.5
ppcor 1.1
qvalue 2.40.0
rclipboard 0.2.1
Rgraphviz 2.52.0
rio 1.2.3
S4Vectors 0.46.0
S7 0.2.0
safetyCharts 0.3.0
safetyData 1.0.0
scatterpie 0.2.4
shinybusy 0.3.3
sortable 0.5.0
sparsevctrs 0.3.3
Tendril 2.0.4
tidytree 0.4.6
toastui 0.4.0
treeio 1.32.0
UCSC.utils 1.4.0
XVector 0.48.0
yulab.utils 0.2.0

Updated Dependencies

  • 101 dependency package with version updates:
Package Name Version Old -> New
admiraldev 1.1.0 -> 1.2.0
admisc 0.36 -> 0.38
AsioHeaders 1.22.1-2 -> 1.30.2-1
bayestestR 0.15.0 -> 0.15.3
bbotk 1.2.0 -> 1.5.0
BH 1.84.0-0 -> 1.87.0-1
BiocVersion 3.20.0 -> 3.21.1
bundle 0.1.1 -> 0.1.2
butcher 0.3.4 -> 0.3.5
cards 0.3.0 -> 0.6.0
chk 0.9.2 -> 0.10.0
chromote 0.5.0 -> 0.5.1
chron 2.3-61 -> 2.3-62
classInt 0.4-10 -> 0.4-11
clock 0.7.1 -> 0.7.3
correlation 0.8.6 -> 0.8.7
cpp11armadillo 0.3.3 -> 0.5.0
datawizard 0.13.0 -> 1.1.0
dendextend 1.18.1 -> 1.19.0
DescTools 0.99.57 -> 0.99.60
DNAcopy 1.80.0 -> 1.82.0
effectsize 0.8.9 -> 1.0.0
etm 1.1.1 -> 1.1.2
gclus 1.3.2 -> 1.3.3
gdtools 0.4.1 -> 0.4.2
ggeffects 1.7.2 -> 2.2.1
ggstats 0.7.0 -> 0.9.0
gld 2.6.6 -> 2.6.7
globals 0.16.3 -> 0.18.0
gower 1.0.1 -> 1.0.2
GPArotation 2024.3-1 -> 2025.3-1
GPfit 1.0-8 -> 1.0-9
gridpattern 1.2.2 -> 1.3.1
hunspell 3.0.5 -> 3.0.6
hypergeo 1.2-13 -> 1.2-14
infer 1.0.7 -> 1.0.8
inline 0.3.19 -> 0.3.21
insight 0.20.5 -> 1.2.0
lava 1.8.0 -> 1.8.1
lmodel2 1.7-3 -> 1.7-4
lpSolve 5.6.21 -> 5.6.23
magick 2.8.5 -> 2.8.6
maps 3.4.2 -> 3.4.2.1
MatchIt 4.5.5 -> 4.7.1
mathjaxr 1.6-0 -> 1.8-0
matrixStats 1.4.1 -> 1.5.0
maxstat 0.7-25 -> 0.7-26
metadat 1.2-0 -> 1.4-0
mets 1.3.4 -> 1.3.6
minty 0.0.1 -> 0.0.5
mlbench 2.1-5 -> 2.1-6
mlr3misc 0.15.1 -> 0.17.0
ndjson 0.9.0 -> 0.9.1
ore 1.7.4.1 -> 1.7.5.1
pak 0.8.0 -> 0.8.0.2
parallelly 1.38.0 -> 1.44.0
parameters 0.23.0 -> 0.25.0
parsnip 1.2.1 -> 1.3.1
pdftools 3.4.1 -> 3.5.0
performance 0.12.4 -> 0.13.0
posterior 1.6.0 -> 1.6.1
prodlim 2024.06.25 -> 2025.04.28
progressr 0.15.0 -> 0.15.1
proj4 1.0-14 -> 1.0-15
PRROC 1.3.1 -> 1.4
qpdf 1.3.4 -> 1.3.5
quantmod 0.4.26 -> 0.4.27
QuickJSR 1.4.0 -> 1.7.0
R.cache 0.16.0 -> 0.17.0
R.oo 1.27.0 -> 1.27.1
RcppParallel 5.1.9 -> 5.1.10
RCurl 1.98-1.16 -> 1.98-1.17
readODS 2.3.1 -> 2.3.2
recipes 1.1.0 -> 1.3.0
Rhtslib 3.2.0 -> 3.4.0
riskRegression 2023.12.21 -> 2025.05.15
Rmpfr 0.9-5 -> 1.1-0
rsample 1.2.1 -> 1.3.0
rstpm2 1.6.6 -> 1.6.7
RTCGA 1.36.0 -> 1.38.0
RTCGA.clinical 20151101.36.0 -> 20151101.38.0
rvg 0.3.4 -> 0.3.5
rxode2ll 2.0.11 -> 2.0.13
s2 1.1.7 -> 1.1.8
seriation 1.5.6 -> 1.5.7
SimDesign 2.17.1 -> 2.19.2
slam 0.1-54 -> 0.1-55
sodium 1.3.2 -> 1.4.0
sp 2.1-4 -> 2.2-0
spacefillr 0.3.3 -> 0.4.0
statsExpressions 1.6.1 -> 1.7.0
SuppDists 1.1-9.8 -> 1.1-9.9
terra 1.7-83 -> 1.8-50
TH.data 1.1-2 -> 1.1-3
TMB 1.9.15 -> 1.9.17
tune 1.2.1 -> 1.3.0
units 0.8-5 -> 0.8-7
vegan 2.6-8 -> 2.6-10
websocket 1.4.2 -> 1.4.4
workflows 1.1.4 -> 1.2.0
zlibbioc 1.52.0 -> 1.54.0

Removed Dependencies

  • 7 removed dependency packages:
Package Name Version
condMVNorm NA
git2r NA
mvnfast NA
pryr NA
rapportools NA
RPushbullet NA
waiter NA

Former Dependencies Added to OpenVal

These packages were formerly dependency packages, but as of this release they have been validated and included as new packages in OpenVal.

  • 46 dependency packages added to OpenVal:
Package Name Version
base64enc 0.1.3
bigD 0.3.1
bit 4.6.0
bitops 1.0.9
clipr 0.8.0
config 0.3.2
conflicted 1.2.0
curl 6.2.2
Deriv 4.1.6
dtplyr 1.3.1
fansi 1.0.6
formatters 0.5.11
Formula 1.2.5
highr 0.11
juicyjuice 0.1.0
labeling 0.4.3
MatrixModels 0.5.4
mime 0.13
modelr 0.1.11
nnls 1.6
openssl 2.3.2
packrat 0.9.2
pins 1.4.1
PKI 0.1.14
praise 1.0.0
quantreg 6.1
rbibutils 2.3
RcppEigen 0.3.4.0.2
RcppTOML 0.2.3
Rdpack 2.6.4
reactR 0.6.1
renv 1.1.4
Rsolnp 1.16
selectr 0.4.2
sf 1.0.21
sourcetools 0.1.7.1
SparseM 1.84.2
sys 3.4.3
systemfonts 1.2.3
textshaping 1.0.1
timechange 0.3.0
utf8 1.2.5
uuid 1.2.1
V8 6.0.3
waldo 0.6.1
whisker 0.4.1

OpenVal2025.03.01

Release Date: 2025-08-04

“June 2025 Minor Release”

This is a minor release of OpenVal that builds on the March 2025 major release and includes additional R packages.

  • Total packages: 454
  • R version: 4.4.2
  • Bioconductor version: 3.20
  • Package snapshot date: 2024-11-07

New

  • 25 new packages:
Package Name Version
abind 1.4.8
BuyseTest 3.0.5
carData 3.0.5
diffobj 0.3.5
farver 2.1.2
flexsurvcure 1.3.1
forestplot 3.1.5
geex 1.1.1
ids 1.0.1
isoband 0.2.7
ldbounds 2.0.2
log4r 0.4.4
logr 1.3.8
mkin 1.2.6
nonmem2rx 0.1.5
PWEALL 1.3.0.1
ratesci 0.4.0
reportr 1.3.0
rms 6.8.2
rmt 1
rootSolve 1.8.2.4
sandwich 3.1.1
summarytools 1.0.1
tidylog 1.1.0
treemapify 2.5.6

Updated

  • 0 packages with version updates.

Removed

  • 0 removed packages.

New Dependencies

  • 16 new dependency packages:
Package Name Version
clisymbols 1.2.0
common 1.1.3
doSNOW 1.0.20
magick 2.8.5
mclust 6.1.1
mets 1.3.4
npde 3.5
ore 1.7.4.1
polspline 1.1.25
pryr 0.1.6
Publish 2023.01.17
rapportools 1.1
riskRegression 2023.12.21
saemix 3.3
timereg 2.0.6
valtools 0.4.1

Updated Dependencies

  • 1 dependency package with version updates:
Package Name Version Old -> New
chromote 0.5.0.9000 -> 0.5.0

Removed Dependencies

  • 3 removed dependency packages:
Package Name Version
GenSA NA
msm NA
OpenVal NA

Former Dependencies Added to OpenVal

These packages were formerly dependency packages, but as of this release they have been validated and included as new packages in OpenVal.

  • 9 dependency packages added to OpenVal:
Package Name Version
abind 1.4.8
carData 3.0.5
diffobj 0.3.5
farver 2.1.2
forestplot 3.1.5
ids 1.0.1
isoband 0.2.7
rootSolve 1.8.2.4
sandwich 3.1.1

OpenVal2025.03.00

Release Date: 2025-03-28

“March 2025 Major Release”

This is a major release of OpenVal that builds on the December 2024 minor release and includes an updated R version, updated snapshot date, additional R packages, and a removed package. Additionally, support for RHEL 9 has been added.

  • Total packages: 429
  • R version: 4.4.2
  • Bioconductor version: 3.20
  • Package snapshot date: 2024-11-07

New

  • 14 new packages:
Package Name Version
coxphw 4.0.3
geepack 1.3.12
httr2 1.0.6
nestcolor 0.1.2
officedown 0.3.3
R2jags 0.8-9
rJava 1.0-11
savvyr 0.1.1
survey 4.4-2
tern.mmrm 0.3.2
tern.rbmi 0.1.4
treemap 2.4-4
tryCatchLog 1.3.1
writexl 1.5.1

Updated

  • 145 packages with version updates:
Package Name Version Old -> New
askpass 1.2.0 -> 1.2.1
base 4.4.1 -> 4.4.2
BiocManager 1.30.23 -> 1.30.25
bit64 4.0.5 -> 4.5.2
bookdown 0.39 -> 0.41
boot 1.3-30 -> 1.3-31
brms 2.21.0 -> 2.22.0
broom 1.0.6 -> 1.0.7
bslib 0.7.0 -> 0.8.0
car 3.1-2 -> 3.1-3
checkmate 2.3.1 -> 2.3.2
colorspace 2.1-0 -> 2.1-1
commonmark 1.9.1 -> 1.9.2
compiler 4.4.1 -> 4.4.2
corrplot 0.92 -> 0.95
cpp11 0.4.7 -> 0.5.0
credentials 2.0.1 -> 2.0.2
crosstable 0.7.0 -> 0.8.1
data.table 1.15.4 -> 1.16.2
datasets 4.4.1 -> 4.4.2
dials 1.2.1 -> 1.3.0
diffdf 1.0.4 -> 1.1.1
digest 0.6.35 -> 0.6.37
doBy 4.6.22 -> 4.6.24
DoseFinding 1.1-1 -> 1.2-1
e1071 1.7-14 -> 1.7-16
emmeans 1.10.2 -> 1.10.5
epiR 2.0.75 -> 2.0.76
evaluate 0.24.0 -> 1.0.1
fastDummies 1.7.3 -> 1.7.4
fitdistrplus 1.1-11 -> 1.2-1
flexsurv 2.3 -> 2.3.2
flextable 0.9.6 -> 0.9.7
foreign 0.8-86 -> 0.8-87
fresh 0.2.0 -> 0.2.1
fs 1.6.4 -> 1.6.5
future 1.33.2 -> 1.34.0
gam 1.22-3 -> 1.22-5
gdata 3.0.0 -> 3.0.1
gert 2.0.1 -> 2.1.4
ggnewscale 0.4.10 -> 0.5.0
ggpmisc 0.5.6 -> 0.6.0
ggrepel 0.9.5 -> 0.9.6
ggstatsplot 0.12.3 -> 0.12.5
glue 1.7.0 -> 1.8.0
golem 0.4.1 -> 0.5.1
gplots 3.1.3.1 -> 3.2.0
graphics 4.4.1 -> 4.4.2
grDevices 4.4.1 -> 4.4.2
grid 4.4.1 -> 4.4.2
gt 0.10.1 -> 0.11.1
gtable 0.3.5 -> 0.3.6
gtsummary 1.7.2 -> 2.0.3
Hmisc 5.1-3 -> 5.2-0
htmlTable 2.4.2 -> 2.4.3
huxtable 5.5.6 -> 5.5.7
igraph 2.0.3 -> 2.1.1
jsonlite 1.8.8 -> 1.8.9
knitr 1.47 -> 1.48
lme4 1.1-35.4 -> 1.1-35.5
lotri 0.4.3 -> 1.0.0
Matrix 1.7-0 -> 1.7-1
meta 7.0-0 -> 8.0-1
metatools 0.1.5 -> 0.1.6
methods 4.4.1 -> 4.4.2
microbenchmark 1.4.10 -> 1.5.0
minqa 1.2.7 -> 1.2.8
mirt 1.41 -> 1.42
mlr3 0.19.0 -> 0.21.1
mlr3learners 0.6.0 -> 0.8.0
mlr3mbo 0.2.2 -> 0.2.6
mlr3pipelines 0.5.2 -> 0.7.0
mlr3tuning 0.20.0 -> 1.1.0
mlr3viz 0.8.0 -> 0.10.0
mmrm 0.3.11 -> 0.3.14
multcomp 1.4-25 -> 1.4-26
mvtnorm 1.2-5 -> 1.3-2
nlme 3.1-165 -> 3.1-166
nloptr 2.1.0 -> 2.1.1
officer 0.6.6 -> 0.6.7
openxlsx 4.2.5.2 -> 4.2.7.1
pagedown 0.20 -> 0.21
parallel 4.4.1 -> 4.4.2
partykit 1.2-20 -> 1.2-22
patchwork 1.2.0 -> 1.3.0
pbkrtest 0.5.2 -> 0.5.3
pharmaversesdtm 1.0.0 -> 1.1.0
pkgbuild 1.4.4 -> 1.4.5
pkgdown 2.0.9 -> 2.1.1
pkglite 0.2.2 -> 0.2.3
pkgload 1.3.4 -> 1.4.0
PMCMRplus 1.9.10 -> 1.9.12
PopED 0.6.0 -> 0.7.0
profvis 0.3.8 -> 0.4.0
ps 1.7.6 -> 1.8.1
psych 2.4.3 -> 2.4.6.26
qs 0.26.3 -> 0.27.2
quarto 1.4 -> 1.4.4
ragg 1.3.2 -> 1.3.3
randomForest 4.7-1.1 -> 4.7-1.2
randomForestSRC 3.2.3 -> 3.3.1
raster 3.6-26 -> 3.6-30
rbmi 1.2.6 -> 1.3.0
Rcpp 1.0.12 -> 1.0.13-1
RcppArmadillo 0.12.8.4.0 -> 14.0.2-1
reprex 2.1.0 -> 2.1.1
reticulate 1.38.0 -> 1.39.0
rjags 4-15 -> 4-16
rjson 0.2.21 -> 0.2.23
rmarkdown 2.27 -> 2.29
Rmpi 0.7-2 -> 0.7-2.1
roxygen2 7.3.1 -> 7.3.2
rpact 4.0.0 -> 4.1.0
RPostgreSQL 0.7-6 -> 0.7-7
rsconnect 1.3.1 -> 1.3.2
rstudioapi 0.16.0 -> 0.17.1
rtables 0.6.8 -> 0.6.10
rxode2 2.1.3 -> 3.0.2
servr 0.30 -> 0.32
shapviz 0.9.3 -> 0.9.6
shiny 1.8.1.1 -> 1.9.1
shinycssloaders 1.0.0 -> 1.1.0
shinyWidgets 0.8.6 -> 0.8.7
spelling 2.3.0 -> 2.3.1
splines 4.4.1 -> 4.4.2
stats 4.4.1 -> 4.4.2
stats4 4.4.1 -> 4.4.2
survminer 0.4.9 -> 0.5.0
tcltk 4.4.1 -> 4.4.2
tern 0.9.5 -> 0.9.6
tidycmprsk 1.0.0 -> 1.1.0
tinytex 0.51 -> 0.54
tools 4.4.1 -> 4.4.2
tseries 0.10-56 -> 0.10-58
usethis 2.2.3 -> 3.0.0
utils 4.4.1 -> 4.4.2
vdiffr 1.0.7 -> 1.0.8
vtable 1.4.6 -> 1.4.7
xfun 0.45 -> 0.49
xgboost 1.7.7.1 -> 1.7.8.1
XML 3.99-0.16.1 -> 3.99-0.17
xportr 0.4.0 -> 0.4.1
xslt 1.4.5 -> 1.4.6
yaImpute 1.0-34 -> 1.0-34.1
yaml 2.3.8 -> 2.3.10

Removed

  • 1 removed package:
Package Name Reason
ggimage The package depends on making requests to remote servers or repositories to retrieve images for plots. However, the instability of these links caused inconsistent test failures, which led to the decision for it's removal.

New Dependencies

  • 18 new dependency packages:
Package Name Version
audio 0.1-11
beepr 2
cards 0.3.0
chromote 0.5.0.9000
cpp11armadillo 0.3.3
etm 1.1.1
GenSA 1.1.14.1
git2r 0.33.0
gridBase 0.4-7
mitools 2.4
msm 1.8.2
pak 0.8.0
pheatmap 1.0.12
R2WinBUGS 2.1-22.1
RPushbullet 0.3.4
rvg 0.3.4
sfd 0.1.0
SimDesign 2.17.1

Updated Dependencies

  • 98 dependency packages with version updates:
Package Name Version Old -> New
abind 1.4-5 -> 1.4-8
admisc 0.35 -> 0.36
afex 1.3-1 -> 1.4-1
antiword 1.3.3 -> 1.3.4
bayestestR 0.13.2 -> 0.15.0
bbotk 0.8.0 -> 1.2.0
bit 4.0.5 -> 4.5.0
bitops 1.0-7 -> 1.0-9
caTools 1.18.2 -> 1.18.3
chk 0.9.1 -> 0.9.2
clock 0.7.0 -> 0.7.1
correlation 0.8.5 -> 0.8.6
curl 5.2.1 -> 6.0.0
datawizard 0.11.0 -> 0.13.0
dendextend 1.17.1 -> 1.18.1
Deriv 4.1.3 -> 4.1.6
DescTools 0.99.54 -> 0.99.57
distributional 0.4.0 -> 0.5.0
DNAcopy 1.78.0 -> 1.80.0
dparser 1.3.1-11 -> 1.3.1-13
effectsize 0.8.8 -> 0.8.9
Exact 3.2 -> 3.3
expm 0.999-9 -> 1.0-0
forestplot 3.1.3 -> 3.1.5
formatters 0.5.8 -> 0.5.9
future.apply 1.11.2 -> 1.11.3
gdtools 0.3.7 -> 0.4.1
ggeffects 1.7.0 -> 1.7.2
ggpp 0.5.7 -> 0.5.8-1
ggstats 0.6.0 -> 0.7.0
gmp 0.7-4 -> 0.7-5
hunspell 3.0.3 -> 3.0.5
insight 0.20.1 -> 0.20.5
ipred 0.9-14 -> 0.9-15
lhs 1.1.6 -> 1.2.0
lmom 3.0 -> 3.2
loo 2.7.0 -> 2.8.0
lpSolve 5.6.20 -> 5.6.21
matrixStats 1.3.0 -> 1.4.1
mboost 2.9-10 -> 2.9-11
mlr3measures 0.5.0 -> 1.0.0
mlr3misc 0.15.0 -> 0.15.1
modelenv 0.1.1 -> 0.2.0
mstate 0.3.2 -> 0.3.3
nnls 1.5 -> 1.6
openssl 2.2.0 -> 2.2.2
ordinal 2023.12-4 -> 2023.12-4.1
paradox 1.0.0 -> 1.0.1
parallelly 1.37.1 -> 1.38.0
parameters 0.22.0 -> 0.23.0
pdftools 3.4.0 -> 3.4.1
performance 0.12.0 -> 0.12.4
pins 1.3.0 -> 1.4.0
polyclip 1.10-6 -> 1.10-7
posterior 1.5.0 -> 1.6.0
PreciseSums 0.6 -> 0.7
prodlim 2023.08.28 -> 2024.06.25
progressr 0.14.0 -> 0.15.0
qpdf 1.3.3 -> 1.3.4
quantreg 5.98 -> 5.99
QuickJSR 1.2.2 -> 1.4.0
R.oo 1.26.0 -> 1.27.0
RApiSerialize 0.1.3 -> 0.1.4
rbibutils 2.2.16 -> 2.3
RcppEigen 0.3.4.0.0 -> 0.3.4.0.2
RcppParallel 5.1.7 -> 5.1.9
RCurl 1.98-1.14 -> 1.98-1.16
Rdpack 2.6 -> 2.6.1
reactR 0.5.0 -> 0.6.1
readODS 2.3.0 -> 2.3.1
recipes 1.0.10 -> 1.1.0
renv 1.0.7 -> 1.0.11
Rhtslib 3.0.0 -> 3.2.0
rstpm2 1.6.3 -> 1.6.6
s2 1.1.6 -> 1.1.7
sandwich 3.1-0 -> 3.1-1
seriation 1.5.5 -> 1.5.6
sf 1.0-16 -> 1.0-19
slam 0.1-50 -> 0.1-54
slider 0.3.1 -> 0.3.2
sodium 1.3.1 -> 1.3.2
SparseM 1.83 -> 1.84-2
StanHeaders 2.32.9 -> 2.32.10
statsExpressions 1.5.4 -> 1.6.1
SuppDists 1.1-9.7 -> 1.1-9.8
sys 3.4.2 -> 3.4.3
terra 1.7-78 -> 1.7-83
timeDate 4032.109 -> 4041.110
TMB 1.9.12 -> 1.9.15
ucminf 1.2.1 -> 1.2.2
uuid 1.2-0 -> 1.2-1
V8 4.4.2 -> 6.0.0
vegan 2.6-6.1 -> 2.6-8
waldo 0.5.2 -> 0.6.0
websocket 1.4.1 -> 1.4.2
wk 0.9.1 -> 0.9.4
xts 0.14.0 -> 0.14.1
zlibbioc 1.50.0 -> 1.52.0

Removed Dependencies

  • 43 removed dependency packages:
Package Name Version
Biobase NA
BiocGenerics NA
BiocIO NA
BiocParallel NA
Biostrings NA
broom.helpers NA
BSgenome NA
BSgenome.Hsapiens.UCSC.hg19 NA
crul NA
DelayedArray NA
formatR NA
futile.logger NA
futile.options NA
GenomeInfoDb NA
GenomeInfoDbData NA
GenomicAlignments NA
GenomicRanges NA
gfonts NA
ggfun NA
ggplotify NA
gridGraphics NA
httpcode NA
IRanges NA
lambda.r NA
magick NA
MatrixGenerics NA
restfulr NA
RhpcBLASctl NA
Rsamtools NA
rtracklayer NA
rxode2et NA
rxode2parse NA
rxode2random NA
S4Arrays NA
S4Vectors NA
SparseArray NA
SummarizedExperiment NA
symengine NA
triebeard NA
UCSC.utils NA
urltools NA
XVector NA
yulab.utils NA

Former Dependencies Added to OpenVal

These packages were formerly dependency packages, but as of this release they have been validated and included as new packages in OpenVal.

  • 2 dependency packages added to OpenVal:
Package Name Version
httr2 1.0.6
rJava 1.0-11

OpenVal2024.09.01

Release Date: 2024-12-13

“December 2024 Minor Release”

This is a minor release of OpenVal that builds on the September 2024 major release and includes additional R packages.

  • Total packages: 416
  • R version: 4.4.1
  • Package snapshot date: 2024-06-22

New

  • 9 new packages:
Package Name Version
admiralonco 1.1.0
furrr 0.3.1
gam 1.22-3
ggiraph 0.8.10
jinjar 0.3.1
norm 1.0-11.1
rhandsontable 0.3.8
RSQLite 2.3.7
shinyWidgets 0.8.6

OpenVal2024.09.00

Release Date: 2024-10-02

“September 2024 Major Release”

This is a major release of OpenVal that builds on the June 2024 minor release and includes an updated R version, updated snapshot date, additional R packages, and a removed package.

  • Total packages: 407
  • R version: 4.4.1
  • Package snapshot date: 2024-06-22

New

  • 17 new packages:
Package Name Version
admiral 1.1.1
cmprsk 2.2-12
corrr 0.4.4
ftExtra 0.6.4
ggmcmc 1.5.1.1
IDEAFilter 0.2.0
networkD3 0.4
Rfit 0.27.0
rjson 0.2.21
rlistings 0.2.9
rtables 0.6.8
shinyalert 3.1.0
shinycssloaders 1.0.0
shinyjs 2.1.0
tern 0.9.5
tidycmprsk 1.0.0
tidytlg 0.1.5

Updated

  • 217 packages with version updates:
Package Name Version Old -> New
arm 1.13-1 -> 1.14-4
backports 1.4.1 -> 1.5.0
base 4.3.2 -> 4.4.1
bayesplot 1.10.0 -> 1.11.1
BiocManager 1.30.22 -> 1.30.23
bizdays 1.0.13 -> 1.0.16
bookdown 0.36 -> 0.39
boot 1.3-28.1 -> 1.3-30
brio 1.1.3 -> 1.1.5
brms 2.20.4 -> 2.21.0
broom 1.0.5 -> 1.0.6
bslib 0.5.1 -> 0.7.0
cachem 1.0.8 -> 1.1.0
Cairo 1.6-1 -> 1.6-2
callr 3.7.3 -> 3.7.6
censored 0.2.0 -> 0.3.2
checkmate 2.3.0 -> 2.3.1
circlize 0.4.15 -> 0.4.16
cli 3.6.1 -> 3.6.3
cluster 2.1.4 -> 2.1.6
coda 0.19-4 -> 0.19-4.1
codetools 0.2-19 -> 0.2-20
commonmark 1.9.0 -> 1.9.1
compiler 4.3.2 -> 4.4.1
consort 1.2.1 -> 1.2.2
cowplot 1.1.1 -> 1.1.3
cpp11 0.4.6 -> 0.4.7
crayon 1.5.2 -> 1.5.3
crosstalk 1.2.0 -> 1.2.1
data.table 1.14.8 -> 1.15.4
datasets 4.3.2 -> 4.4.1
DBI 1.1.3 -> 1.2.3
dbplyr 2.4.0 -> 2.5.0
debugme 1.1.0 -> 1.2.0
desc 1.4.2 -> 1.4.3
deSolve 1.38 -> 1.40
dials 1.2.0 -> 1.2.1
digest 0.6.33 -> 0.6.35
doBy 4.6.20 -> 4.6.22
doFuture 1.0.0 -> 1.0.1
downlit 0.4.3 -> 0.4.4
DT 0.30 -> 0.33
e1071 1.7-13 -> 1.7-14
emmeans 1.8.9 -> 1.10.2
epiR 2.0.65 -> 2.0.75
estimability 1.4.1 -> 1.5.1
evaluate 0.23 -> 0.24.0
extraDistr 1.9.1 -> 1.10.0
fastmap 1.1.1 -> 1.2.0
fastshap 0.1.0 -> 0.1.1
flexsurv 2.2.2 -> 2.3
flextable 0.9.4 -> 0.9.6
foreign 0.8-85 -> 0.8-86
fs 1.6.3 -> 1.6.4
future 1.33.0 -> 1.33.2
gert 2.0.0 -> 2.0.1
GGally 2.1.2 -> 2.2.1
gganimate 1.0.8 -> 1.0.9
ggdendro 0.1.23 -> 0.2.0
ggdist 3.3.0 -> 3.3.2
ggforce 0.4.1 -> 0.4.2
ggfortify 0.4.16 -> 0.4.17
ggh4x 0.2.6 -> 0.2.8
ggnewscale 0.4.9 -> 0.4.10
ggpattern 1.0.1 -> 1.1.1
ggplot2 3.4.4 -> 3.5.1
ggpmisc 0.5.5 -> 0.5.6
ggPMX 1.2.10 -> 1.2.11
ggrepel 0.9.4 -> 0.9.5
ggstatsplot 0.12.1 -> 0.12.3
ggsurvfit 1.0.0 -> 1.1.0
ggthemes 4.2.4 -> 5.1.0
gh 1.4.0 -> 1.4.1
glue 1.6.2 -> 1.7.0
gMCP 0.8-15 -> 0.8-17
gmodels 2.18.1.1 -> 2.19.1
gplots 3.1.3 -> 3.1.3.1
graphics 4.3.2 -> 4.4.1
grDevices 4.3.2 -> 4.4.1
grid 4.3.2 -> 4.4.1
gt 0.10.0 -> 0.10.1
gtable 0.3.4 -> 0.3.5
gtools 3.9.4 -> 3.9.5
hardhat 1.3.0 -> 1.4.0
haven 2.5.3 -> 2.5.4
Hmisc 5.1-1 -> 5.1-3
hrbrthemes 0.8.0 -> 0.8.7
htmltools 0.5.7 -> 0.5.8.1
htmlwidgets 1.6.2 -> 1.6.4
httpuv 1.6.12 -> 1.6.15
huxtable 5.5.2 -> 5.5.6
igraph 1.5.1 -> 2.0.3
iml 0.11.1 -> 0.11.3
jsonlite 1.8.7 -> 1.8.8
keras 2.13.0 -> 2.15.0
KernSmooth 2.23-22 -> 2.23-24
keyring 1.3.1 -> 1.3.2
knitr 1.45 -> 1.47
labelled 2.12.0 -> 2.13.0
later 1.3.1 -> 1.3.2
lattice 0.22-5 -> 0.22-6
lemon 0.4.7 -> 0.4.9
lintr 3.1.1 -> 3.1.2
lme4 1.1-35.1 -> 1.1-35.4
logrx 0.3.0 -> 0.3.1
maftools 2.18.0 -> 2.20.0
markdown 1.11 -> 1.13
MASS 7.3-60 -> 7.3-61
Matrix 1.6-3 -> 1.7-0
meta 6.5-0 -> 7.0-0
metacore 0.1.2 -> 0.1.3
metafor 4.4-0 -> 4.6-0
methods 4.3.2 -> 4.4.1
mgcv 1.9-0 -> 1.9-1
minqa 1.2.6 -> 1.2.7
mlr3 0.17.0 -> 0.19.0
mlr3learners 0.5.6 -> 0.6.0
mlr3mbo 0.2.1 -> 0.2.2
mlr3pipelines 0.5.0-1 -> 0.5.2
mlr3tuning 0.19.0 -> 0.20.0
mlr3viz 0.6.1 -> 0.8.0
mmrm 0.3.6 -> 0.3.11
munsell 0.5.0 -> 0.5.1
mvtnorm 1.2-3 -> 1.2-5
naniar 1.0.0 -> 1.1.0
nlme 3.1-163 -> 3.1-165
nloptr 2.0.3 -> 2.1.0
odbc 1.3.5 -> 1.5.0
officer 0.6.3 -> 0.6.6
parallel 4.3.2 -> 4.4.1
patchwork 1.1.3 -> 1.2.0
pharmaversesdtm 0.1.1 -> 1.0.0
pkgbuild 1.4.2 -> 1.4.4
pkgdown 2.0.7 -> 2.0.9
pkglite 0.2.1 -> 0.2.2
pkgload 1.3.3 -> 1.3.4
plotly 4.10.3 -> 4.10.4
PMCMRplus 1.9.8 -> 1.9.10
processx 3.8.2 -> 3.8.4
progress 1.2.2 -> 1.2.3
promises 1.2.1 -> 1.3.0
ps 1.7.5 -> 1.7.6
pscl 1.5.5.1 -> 1.5.9
pspline 1.0-19 -> 1.0-20
psych 2.3.9 -> 2.4.3
qs 0.25.5 -> 0.26.3
quarto 1.3 -> 1.4
ragg 1.2.6 -> 1.3.2
randomForestSRC 3.2.2 -> 3.2.3
rbmi 1.2.5->1.2.6
rcompanion 2.4.34 -> 2.4.36
Rcpp 1.0.11 -> 1.0.12
RcppArmadillo 0.12.6.6.0 -> 0.12.8.4.0
readr 2.1.4 -> 2.1.5
readtext 0.90 -> 0.91
remotes 2.4.2.1 -> 2.5.0
reprex 2.0.2 -> 2.1.0
reticulate 1.34.0 -> 1.38.0
rjags 4-14 -> 4-15
rlang 1.1.2->1.1.4
rmarkdown 2.25 -> 2.27
Rmpi 0.7-1 -> 0.7-2
RODBC 1.3-21 -> 1.3-23
roxygen2 7.2.3 -> 7.3.1
rpact 3.4.0 -> 4.0.0
rpart 4.1.21 -> 4.1.23
rpart.plot 3.1.1 -> 3.1.2
RPostgreSQL 0.7-5 -> 0.7-6
rsconnect 1.1.1 -> 1.3.1
rstan 2.32.3 -> 2.32.6
rstudioapi 0.15.0 -> 0.16.0
runjags 2.2.2-1.1 -> 2.2.2-4
rvest 1.0.3 -> 1.0.4
rxode2 2.0.14 -> 2.1.3
sass 0.4.7 -> 0.4.9
scales 1.2.1 -> 1.3.0
servr 0.27 -> 0.30
shapviz 0.9.2 -> 0.9.3
shiny 1.8.0 -> 1.8.1.1
showtext 0.9-6 -> 0.9-7
sjPlot 2.8.15 -> 2.8.16
spelling 2.2.1 -> 2.3.0
splines 4.3.2 -> 4.4.1
stats 4.3.2 -> 4.4.1
stats4 4.3.2 -> 4.4.1
stringi 1.8.1 -> 1.8.4
styler 1.10.2 -> 1.10.3
survival 3.5-7 -> 3.7-0
svglite 2.1.2 -> 2.1.3
sysfonts 0.8.8 -> 0.8.9
tcltk 4.3.2 -> 4.4.1
testthat 3.2.0 -> 3.2.1.1
tictoc 1.2 -> 1.2.1
tidymodels 1.1.1 -> 1.2.0
tidyr 1.3.0 -> 1.3.1
tidyselect 1.2.0 -> 1.2.1
tinytex 0.48 -> 0.51
tools 4.3.2 -> 4.4.1
Tplyr 1.1.0 -> 1.2.1
tseries 0.10-54 -> 0.10-56
usethis 2.2.2 -> 2.2.3
utils 4.3.2 -> 4.4.1
vctrs 0.6.4 -> 0.6.5
viridis 0.6.4 -> 0.6.5
vroom 1.6.4 -> 1.6.5
xfun 0.41 -> 0.45
xgboost 1.7.5.1 -> 1.7.7.1
XML 3.99-0.15 -> 3.99-0.16.1
xml2 1.3.5 -> 1.3.6
xportr 0.3.1 -> 0.4.0
xpose 0.4.17 -> 0.4.18
xpose4 4.7.2 -> 4.7.3
xslt 1.4.4 -> 1.4.5
yaImpute 1.0-33 -> 1.0-34
yaml 2.3.7 -> 2.3.8
yardstick 1.2.0 -> 1.3.1
zip 2.3.0 -> 2.3.1

Removed

  • 1 removed package:
Package Name Reason
psrwe Package was archived from CRAN on 2023-09-28 as issues were not corrected despite reminders. This led to it being classified as high risk, and as additional tests were implemented, failures occurred, necessitating its removal.

OpenVal2024.03.01

Release Date: 2024-07-01

“June 2024 Minor Release”

This is a minor release of OpenVal that builds on the March 2024 patch release and includes additional R packages, and an updated package version.

  • Total packages: 391
  • R version: 4.3.2
  • Package snapshot date: 2023-11-20

New

  • 36 new packages:
Package Name Version
anytime 0.3.9
bizdays 1.0.13
circlize 0.4.15
doBy 4.6.20
e1071 1.7-13
factoextra 1.0.7
fastDummies 1.7.3
FME 1.3.6.3
ggdendro 0.1.23
ggdensity 1.0.0
ggdist 3.3.0
ggh4x 0.2.6
ggsignif 0.6.4
ggstatsplot 0.12.1
igraph 1.5.1
keras 2.13.0
keyring 1.3.1
mediation 4.5.0
mlr3learners 0.5.6
mlr3mbo 0.2.1
mlr3pipelines 0.5.0-1
mlr3tuning 0.19.0
mlr3viz 0.6.1
multcomp 1.4-25
naniar 1.0.0
pacman 0.5.1
PopED 0.6.0
PropCIs 0.3-0
ROCR 1.0-11
rpart.plot 3.1.1
sjPlot 2.8.15
table1 1.4.3
tseries 0.10-54
vetiver 0.2.5
vtable 1.4.6
xpose 0.4.17

Updated

  • 1 package with version updates:
Package Name Version Old -> New
kableExtra 1.3.4 -> 1.4.0

Note: Minor releases do not typically have updated package versions. Package kableExtra was updated to fix a bug with R 4.3.2 that caused an error when the package was loaded within an R markdown file.

OpenVal2024.03.00.01

Release Date: 2024-05-06

“March 2024 Patch Release”

This is a patch release of OpenVal that includes fixes to the March 2024 major release.

  • Total packages: 355
  • R version: 4.3.2
  • Package snapshot date: 2023-11-20

Fixed

  • CommonJavaJars dependency package was updated to remove vulnerable log4.jar file
  • Installed Chrome to address dependency in the pagedown::chrome_print() function

OpenVal2024.03.00

Release Date: 2024-03-29

“March 2024 Major Release”

This is a major release of OpenVal that builds on the January 2024 minor release and includes an updated R version, updated snapshot date, and additional R packages.

  • Total packages: 355
  • R version: 4.3.2
  • Package snapshot date: 2023-11-20

New

  • 39 new packages:
Package Name Version
arm 1.13-1
arsenal 3.6.3
aws.s3 0.3.21
boa 1.1.8-2
consort 1.2.1
cyclocomp 1.1.1
dictionar6 0.1.3
distr6 1.6.9
doParallel 1.0.17
fitdistrplus 1.1-11
foreach 1.5.2
fresh 0.2.0
ggbeeswarm 0.7.2
ggExtra 0.10.1
ggnewscale 0.4.9
ggpattern 1.0.1
golem 0.4.1
hardhat 1.3.0
meta 6.5-0
metafor 4.4-0
minpack.lm 1.2-4
minqa 1.2.6
nloptr 2.0.3
param6 0.2.4
partykit 1.2-20
pharmaversesdtm 0.1.1
powerjoin 0.1.0
r2rtf 1.1.1
reactable 0.4.4
rlist 0.4.6.2
RODBC 1.3-21
RPostgreSQL 0.7-5
set6 0.2.4
shinydashboard 0.7.2
striprtf 0.6.0
viridis 0.6.4
xfun 0.41
xpose4 4.7.2
xslt 1.4.4

Updated

  • 117 packages with version updates:
Package Name Version Old -> New
askpass 1.1 -> 1.2.0
base 4.2.1 -> 4.3.2
BiocManager 1.30.21.1 -> 1.30.22
bookdown 0.34 -> 0.36
brms 2.19.0 -> 2.20.4
bslib 0.5.0 -> 0.5.1
Cairo 1.6-0 -> 1.6-1
cat 0.0-7 -> 0.0-9
checkmate 2.2.0 -> 2.3.0
coin 1.4-2 -> 1.4-3
compiler 4.2.1 -> 4.3.2
covr 3.6.2 -> 3.6.4
cpp11 0.4.5 -> 0.4.6
credentials 1.3.2 -> 2.0.1
crosstable 0.6.2 -> 0.7.0
datasets 4.2.1 -> 4.3.2
dbplyr 2.3.3 -> 2.4.0
deSolve 1.36 -> 1.38
DoseFinding 1.0-5 -> 1.1-1
dplyr 1.1.2 -> 1.1.4
DT 0.28 -> 0.30
emmeans 1.8.7 -> 1.8.9
epiR 2.0.62 -> 2.0.65
evaluate 0.21 -> 0.23
flexdashboard 0.6.1 -> 0.6.2
flextable 0.9.2 -> 0.9.4
fontawesome 0.5.1 -> 0.5.2
foreign 0.8-84 -> 0.8-85
gdata 2.19.0 -> 3.0.0
gert 1.9.2 -> 2.0.0
ggplot2 3.4.2 -> 3.4.4
ggpmisc 0.5.3 -> 0.5.5
ggrepel 0.9.3 -> 0.9.4
ggsurvfit 0.3.0 -> 1.0.0
glmnet 4.1-7 -> 4.1-8
Gmisc 3.0.2 -> 3.0.3
graphics 4.2.1 -> 4.3.2
grDevices 4.2.1 -> 4.3.2
grid 4.2.1 -> 4.3.2
gt 0.9.0 -> 0.10.0
gtable 0.3.3 -> 0.3.4
Hmisc 5.1-0 -> 5.1-1
htmlTable 2.4.1 -> 2.4.2
htmltools 0.5.5 -> 0.5.7
httpuv 1.6.11 -> 1.6.12
httr 1.4.6 -> 1.4.7
knitr 1.43 -> 1.45
lattice 0.21-8 -> 0.22-5
lemon 0.4.6 -> 0.4.7
lifecycle 1.0.3 -> 1.0.4
lintr 3.1.0 -> 3.1.1
lme4 1.1-34 -> 1.1-35.1
logrx 0.2.2 -> 0.3.0
lubridate 1.9.2 -> 1.9.3
maftools 2.14.0 -> 2.18.0
markdown 1.7 -> 1.11
Matrix 1.6-0 -> 1.6-3
methods 4.2.1 -> 4.3.2
mirt 1.39 -> 1.41
mlr3 0.16.1 -> 0.17.0
mmrm 0.2.2 -> 0.3.6
mockery 0.4.3 -> 0.4.4
mvtnorm 1.2-2 -> 1.2-3
nlme 3.1-162 -> 3.1-163
officer 0.6.2 -> 0.6.3
parallel 4.2.1 -> 4.3.2
patchwork 1.1.2 -> 1.1.3
pkgload 1.3.2.1 -> 1.3.3
plotly 4.10.2 -> 4.10.3
plotrix 3.8-2 -> 3.8-4
plyr 1.8.8 -> 1.8.9
PMCMRplus 1.9.7 -> 1.9.8
prettyunits 1.1.1 -> 1.2.0
promises 1.2.0.1 -> 1.2.1
psych 2.3.6 -> 2.3.9
purrr 1.0.1 -> 1.0.2
quarto 1.2 -> 1.3
R.utils 2.12.2 -> 2.12.3
ragg 1.2.5 -> 1.2.6
ranger 0.15.1 -> 0.16.0
raster 3.6-23 -> 3.6-26
rbmi 1.2.3 -> 1.2.5
rcompanion 2.4.30 -> 2.4.34
RcppArmadillo 0.12.4.1.0 -> 0.12.6.6.0
rematch 1.0.1 -> 2.0.0
reticulate 1.30 -> 1.34.0
rlang 1.1.1 -> 1.1.2
rmarkdown 2.23 -> 2.25
rpart 4.1.19 -> 4.1.21
rprojroot 2.0.3 -> 2.0.4
rsconnect 1.0.1 -> 1.1.1
rstan 2.21.8 -> 2.32.3
runjags 2.2.2-1 -> 2.2.2-1.1
rxode2 2.0.13 -> 2.0.14
shapviz 0.9.1 -> 0.9.2
shiny 1.7.4.1 -> 1.8.0
splines 4.2.1 -> 4.3.2
stats 4.2.1 -> 4.3.2
stats4 4.2.1 -> 4.3.2
stringi 1.7.12 -> 1.8.1
stringr 1.5.0 -> 1.5.1
styler 1.10.1 -> 1.10.2
survival 3.5-5 -> 3.5-7
svglite 2.1.1 -> 2.1.2
tcltk 4.2.1 -> 4.3.2
testthat 3.1.10 -> 3.2.0
tidymodels 1.1.0 -> 1.1.1
tinytex 0.45 -> 0.48
tools 4.2.1 -> 4.3.2
utils 4.2.1 -> 4.3.2
vctrs 0.6.3 -> 0.6.4
vdiffr 1.0.5 -> 1.0.7
vip 0.4.0 -> 0.4.1
vroom 1.6.3 -> 1.6.4
withr 2.5.0 -> 2.5.2
XML 3.99-0.14 -> 3.99-0.15
xportr 0.3.0 -> 0.3.1

OpenVal2023.09.02

Release Date: 2024-01-31

“January 2024 Minor Release”

This is a minor release of OpenVal that builds on the December 2023 minor release and includes an additional feature and a fix.

  • Total packages: 316
  • R version: 4.2.1
  • Package snapshot date: 2023-07-31

New

  • New installation verification function

Fixed

  • Updated Validation Report for inconsistencies in package versions between the Risk Assessment and the Validation Assessment sections

OpenVal2023.09.01

Release Date: 2023-12-29

“December 2023 Minor Release”

This is a minor release of OpenVal that builds on the September 2023 major release and includes additional R packages.

  • Total packages: 316
  • R version: 4.2.1
  • Package snapshot date: 2023-07-31

New

  • 53 new packages:
Package Name Version
assertive 0.3-6
censored 0.2.0
DALEX 2.4.3
depmixS4 1.5-0
doFuture 1.0.0
doRNG 1.8.6
emojifont 0.5.5
extraDistr 1.9.1
flexdashboard 0.6.1
flexsurv 2.2.2
gemtc 1.0-2
GGally 2.1.2
ggalt 0.4.0
gganimate 1.0.8
ggcharts 0.2.1
ggforce 0.4.1
ggPMX 1.2.10
ggthemes 4.2.4
Gmisc 3.0.2
gridtext 0.1.5
Hmisc 5.1-0
hrbrthemes 0.8.0
iml 0.11.1
jpeg 0.1-10
labelled 2.12.0
lotri 0.4.3
mirt 1.39
mlr3 0.16.1
pagedown 0.2
pander 0.6.5
PMCMRplus 1.9.7
pscl 1.5.5.1
qs 0.25.5
randomForest 4.7-1.1
randomForestExplainer 0.10.1
randomForestSRC 3.2.2
ranger 0.15.1
RcppArmadillo 0.12.4.1.0
Rmpi 0.7-1
rstan 2.21.8
runjags 2.2.2-1
rxode2 2.0.13
shapviz 0.9.1
sjlabelled 1.2.0
skimr 2.1.5
slickR 0.6.0
splitstackshape 1.4.8
survminer 0.4.9
tidymodels 1.1.0
vip 0.4.0
xgboost 1.7.5.1
xtable 1.8-4
yaImpute 1.0-33

OpenVal2023.09.00

Release Date: 2023-10-11

“September 2023 Major Release”

  • Total packages: 263
  • R version: 4.2.1
  • Package snapshot date: 2023-07-31