Introduction
This page provides the release notes associated with OpenVal.
OpenVal2026.09.00
Release Date: 2026-09-11
“September 2026 Major Release”
This is a major release of OpenVal that builds on the June 2026 minor release and includes an updated R version, updated snapshot date, and additional R packages.
- Total packages: 709
- R version: 4.6.0
- Bioconductor version: 3.23
- Package snapshot date: 2026-05-31
New
- 97 new packages:
| Package Name | Version |
|---|---|
| admiralmetabolic | 0.3.0 |
| arrow | 24.0.0 |
| binom | 1.1-1.1 |
| btw | 1.2.1 |
| cdcanthro | 0.2.0 |
| clinDR | 2.5.2 |
| clock | 0.7.4 |
| cmdstanr | 0.9.0 |
| colourpicker | 1.3.0 |
| ComplexUpset | 1.3.3 |
| CompQuadForm | 1.4.4 |
| crmPack | 2.1.0 |
| diagram | 1.6.5 |
| DiagrammeR | 1.0.12 |
| DiagrammeRsvg | 0.1 |
| dmutate | 0.2.0 |
| formatR | 1.14 |
| formula.tools | 1.7.1 |
| futile.logger | 1.4.9 |
| futile.options | 1.0.1 |
| future.apply | 1.20.2 |
| future.batchtools | 0.22.0 |
| GenSA | 1.1.15 |
| globals | 0.19.1 |
| gower | 1.0.2 |
| ipred | 0.9-15 |
| ipw | 1.3.0 |
| jomo | 2.7-6 |
| lambda.r | 1.2.4 |
| lastdose | 0.5.0 |
| latticeExtra | 0.6-31 |
| listenv | 0.10.1 |
| logger | 0.4.2 |
| logistf | 1.26.1 |
| logitnorm | 0.8.39 |
| lvmisc | 0.1.2 |
| magic | 1.6-1 |
| mathjaxr | 2.0-0 |
| maxLik | 1.5-2.2 |
| metadat | 1.6-0 |
| mirai | 2.7.0 |
| mitml | 0.4-5 |
| mrgda | 0.14.0 |
| mrggsave | 0.4.7 |
| mrgmisc | 0.3.0 |
| nanoarrow | 0.8.0 |
| nanonext | 1.9.0 |
| NMdata | 0.2.4 |
| nmrec | 0.5.2 |
| operator.tools | 1.6.3.1 |
| ordinal | 2025.12-29 |
| pan | 1.9 |
| parallelly | 1.47.0 |
| parsedate | 1.3.2 |
| pbapply | 1.7-4 |
| pkgcache | 2.2.5 |
| pmforest | 0.2.1 |
| pmparams | 0.3.3 |
| pmplots | 0.6.0 |
| pmtables | 0.11.1 |
| pracma | 2.4.6 |
| prodlim | 2026.03.11 |
| progressr | 0.19.0 |
| proxy | 0.4-29 |
| pwr | 1.3-0 |
| quadprog | 1.5-8 |
| rAccess | 0.1.1.3 |
| Rglpk | 0.6-5.1 |
| rngtools | 1.5.2 |
| rstanarm | 2.32.2 |
| rsvg | 2.7.0 |
| shape | 1.4.6.1 |
| shinyAce | 0.4.4 |
| shinyFiles | 0.9.3 |
| simpar | 0.1.1 |
| slam | 0.1-55 |
| sortable | 0.6.0 |
| sparsevctrs | 0.3.6 |
| SQUAREM | 2026.1 |
| summarytools | 1.1.5 |
| teal | 1.1.0 |
| teal.code | 0.7.1 |
| teal.data | 0.8.0 |
| teal.modules.clinical | 0.12.0 |
| teal.modules.general | 0.6.0 |
| teal.reporter | 0.6.1 |
| teal.slice | 0.7.1 |
| teal.transform | 0.7.1 |
| teal.widgets | 0.6.0 |
| TH.data | 1.1-5 |
| tidybayes | 3.0.7 |
| tidyvpc | 1.5.2 |
| timeDate | 4052.112 |
| TMB | 1.9.21 |
| ucminf | 1.2.3 |
| waiter | 0.2.5.1 |
| yspec | 0.8.0 |
Updated
- 280 packages with version updates.
| Package Name | Version Old -> New |
|---|---|
| admiral | 1.3.1 -> 1.4.2 |
| admiraldev | 1.3.1 -> 1.4.1 |
| admiralonco | 1.3 -> 1.4.1 |
| admiralophtha | 1.3 -> 1.4 |
| admiralpeds | 0.2.1 -> 0.3 |
| admiralvaccine | 0.5 -> 0.6 |
| afex | 1.5 -> 1.5.1 |
| anytime | 0.3.12 -> 0.3.13 |
| arm | 1.14.4 -> 1.15.3 |
| backports | 1.5 -> 1.5.1 |
| base | 4.5.2 -> 4.6 |
| base64enc | 0.1.3 -> 0.1.6 |
| BayesianMCPMod | 1.2 -> 1.3.2 |
| bayesplot | 1.14 -> 1.15 |
| BH | 1.87.0.1 -> 1.90.0.1 |
| billboarder | 0.5 -> 0.5.1 |
| biomaRt | 2.66 -> 2.68 |
| bit64 | 4.6.0.1 -> 4.8.2 |
| blob | 1.2.4 -> 1.3 |
| bookdown | 0.45 -> 0.46 |
| broom | 1.0.1 -> 1.0.13 |
| broom.mixed | 0.2.9.6 -> 0.2.9.7 |
| bslib | 0.9 -> 0.11 |
| car | 3.1.3 -> 3.1.5 |
| carData | 3.0.5 -> 3.0.6 |
| cards | 0.7 -> 0.8 |
| cardx | 0.3 -> 0.3.3 |
| censored | 0.3.3 -> 0.3.4 |
| checkmate | 2.3.3 -> 2.3.4 |
| circlize | 0.4.16 -> 0.4.18 |
| cli | 3.6.5 -> 3.6.6 |
| clipr | 0.8 -> 0.8.1 |
| cluster | 2.1.8.1 -> 2.1.8.2 |
| common | 1.1.3 -> 1.1.5 |
| compiler | 4.5.2 -> 4.6 |
| consort | 1.2.2 -> 1.2.3 |
| cpp11 | 0.5.2 -> 0.5.5 |
| crew | 1.3 -> 1.3.1 |
| crosstable | 0.8.2 -> 0.9 |
| curl | 7.0 -> 7.1 |
| cyclocomp | 1.1.1 -> 1.1.2 |
| data.table | 1.17.8 -> 1.18.4 |
| datasets | 4.5.2 -> 4.6 |
| DBI | 1.2.3 -> 1.3 |
| dbplyr | 2.5.1 -> 2.5.2 |
| deSolve | 1.4 -> 1.42 |
| devtools | 2.4.6 -> 2.5.2 |
| dials | 1.4.2 -> 1.4.3 |
| distr6 | 1.6.9 -> 1.8.4 |
| distributional | 0.5 -> 0.7 |
| doBy | 4.7 -> 4.7.1 |
| doFuture | 1.1.2 -> 1.2.2 |
| doRNG | 1.8.6.2 -> 1.8.6.3 |
| dplyr | 1.1.4 -> 1.2.1 |
| dtplyr | 1.3.2 -> 1.3.3 |
| e1071 | 1.7.16 -> 1.7.17 |
| ellipsis | 0.3.2 -> 0.3.3 |
| emmeans | 2.0 -> 2.0.3 |
| emojifont | 0.5.5 -> 0.6 |
| epiR | 2.0.88 -> 2.0.93 |
| extraDistr | 1.10 -> 1.10.0.4 |
| factoextra | 1.0.7 -> 2.0 |
| fastDummies | 1.7.5 -> 1.7.6 |
| fastshap | 0.1.1 -> 0.3 |
| fitdistrplus | 1.2.4 -> 1.2.6 |
| flexdashboard | 0.6.2 -> 0.6.3 |
| flextable | 0.9.1 -> 0.9.11 |
| fmtr | 1.7 -> 1.7.3 |
| foreign | 0.8.9 -> 0.8.91 |
| forestplot | 3.1.7 -> 3.2 |
| formatters | 0.5.11 -> 0.5.12 |
| fs | 1.6.6 -> 2.1 |
| furrr | 0.3.1 -> 0.4 |
| future | 1.68 -> 1.70 |
| gam | 1.22.6 -> 1.22.7 |
| gargle | 1.6 -> 1.6.1 |
| gdtools | 0.4.4 -> 0.5.1 |
| gemtc | 1.1 -> 1.1.1 |
| gert | 2.2 -> 2.3.1 |
| ggdensity | 1.0 -> 1.0.1 |
| ggiraph | 0.9.2 -> 0.9.6 |
| ggpattern | 1.2.1 -> 1.3.1 |
| ggplot2 | 4.0.1 -> 4.0.3 |
| ggpmisc | 0.6.3 -> 0.7 |
| ggpubr | 0.6.2 -> 0.6.3 |
| ggrepel | 0.9.6 -> 0.9.8 |
| ggstats | 0.11 -> 0.13 |
| ggstatsplot | 0.13.3 -> 1.0 |
| gh | 1.5 -> 1.6 |
| glmnet | 4.1.1 -> 5 |
| glue | 1.8 -> 1.8.1 |
| Gmisc | 3.0.4 -> 3.2 |
| graphics | 4.5.2 -> 4.6 |
| grDevices | 4.5.2 -> 4.6 |
| grid | 4.5.2 -> 4.6 |
| gridtext | 0.1.5 -> 0.1.6 |
| gsDesign | 3.7 -> 3.9 |
| gt | 1.1 -> 1.3 |
| gtsummary | 2.4 -> 2.5.1 |
| hardhat | 1.4.2 -> 1.4.3 |
| highr | 0.11 -> 0.12 |
| Hmisc | 5.2.4 -> 5.2.5 |
| hrbrthemes | 0.8.7 -> 0.9.3 |
| htmlTable | 2.4.3 -> 2.5 |
| htmltools | 0.5.8.1 -> 0.5.9 |
| httpuv | 1.6.16 -> 1.6.17 |
| httr | 1.4.7 -> 1.4.8 |
| httr2 | 1.2.1 -> 1.2.2 |
| igraph | 2.2.1 -> 2.3.2 |
| isoband | 0.2.7 -> 0.3 |
| jose | 1.2.1 -> 2.0 |
| keras | 2.16 -> 2.16.1 |
| knitr | 1.5 -> 1.51 |
| later | 1.4.4 -> 1.4.8 |
| latex2exp | 0.9.6 -> 0.9.8 |
| lattice | 0.22.7 -> 0.22.9 |
| lava | 1.8.2 -> 1.9.1 |
| lazyeval | 0.2.2 -> 0.2.3 |
| libr | 1.3.9 -> 1.4.1 |
| lifecycle | 1.0.4 -> 1.0.5 |
| litedown | 0.8 -> 0.9 |
| lme4 | 1.1.37 -> 2.0.1 |
| lmerTest | 3.1.3 -> 3.2.1 |
| logging | 0.10.108 -> 0.10.111 |
| loo | 2.8 -> 2.9 |
| lotri | 1.0.2 -> 1.0.4 |
| lubridate | 1.9.4 -> 1.9.5 |
| maftools | 2.26 -> 2.28 |
| magick | 2.9 -> 2.9.1 |
| magrittr | 2.0.4 -> 2.0.5 |
| Matrix | 1.7.4 -> 1.7.5 |
| meta | 8.2.1 -> 8.5 |
| metacore | 0.2.1 -> 0.3 |
| metafor | 4.8 -> 5.0.1 |
| metatools | 0.2 -> 0.3 |
| methods | 4.5.2 -> 4.6 |
| mice | 3.18 -> 3.19 |
| mirt | 1.45.1 -> 1.46.1 |
| mlr3 | 1.2 -> 1.6 |
| mlr3learners | 0.13 -> 0.14 |
| mlr3pipelines | 0.10 -> 0.11 |
| mlr3tuning | 1.5 -> 1.6 |
| mlr3viz | 0.10.1 -> 0.11 |
| mmrm | 0.3.15 -> 0.3.17 |
| mrgsolve | 1.6.1 -> 2.0.1 |
| multcomp | 1.4.29 -> 1.4.3 |
| mvtnorm | 1.3.3 -> 1.4 |
| nanotime | 0.3.12 -> 0.3.15 |
| nlme | 3.1.168 -> 3.1.169 |
| odbc | 1.6.3 -> 1.7 |
| officer | 0.7.1 -> 0.7.5 |
| openssl | 2.3.4 -> 2.4.1 |
| org.Hs.eg.db | 3.22 -> 3.23.1 |
| pagedown | 0.23 -> 0.24 |
| parallel | 4.5.2 -> 4.6 |
| parsnip | 1.4 -> 1.6 |
| partykit | 1.2.24 -> 1.2.27 |
| pathview | 1.50 -> 1.52 |
| pharmaverseadam | 1.2 -> 1.3 |
| pharmaversesdtm | 1.3.1 -> 1.4.1 |
| pins | 1.4.1 -> 1.4.2 |
| pkglite | 0.2.4 -> 0.2.5 |
| pkgload | 1.4.1 -> 1.5.2 |
| plotly | 4.11 -> 4.12 |
| plotrix | 3.8.13 -> 3.8.14 |
| plumber | 1.3 -> 1.3.3 |
| png | 0.1.8 -> 0.1.9 |
| polycor | 0.8.1 -> 0.8.2 |
| posterior | 1.6.1 -> 1.7 |
| processx | 3.8.6 -> 3.9 |
| ps | 1.9.1 -> 1.9.3 |
| psych | 2.5.6 -> 2.6.5 |
| purrr | 1.2 -> 1.2.2 |
| qs2 | 0.1.6 -> 0.2.1 |
| QuickJSR | 1.8.1 -> 1.10 |
| r2rtf | 1.2 -> 1.3 |
| ragg | 1.5 -> 1.5.2 |
| randomForestSRC | 3.4.5 -> 3.6.2 |
| ranger | 0.17 -> 0.18 |
| rappdirs | 0.3.3 -> 0.3.4 |
| RBesT | 1.8.2 -> 1.9 |
| rbibutils | 2.4 -> 2.4.1 |
| rbmi | 1.5.2 -> 1.6 |
| rcompanion | 2.5.1 -> 2.5.2 |
| Rcpp | 1.1 -> 1.1.1.1.1 |
| RcppArmadillo | 15.2.2.1 -> 15.2.7.1 |
| RcppParallel | 5.1.11.1 -> 5.1.11.2 |
| Rdpack | 2.6.4 -> 2.6.6 |
| readr | 2.1.6 -> 2.2 |
| readxl | 1.4.5 -> 1.5 |
| recipes | 1.3.1 -> 1.3.3 |
| reformulas | 0.4.2 -> 0.4.4 |
| renv | 1.1.5 -> 1.2.3 |
| reporter | 1.4.5 -> 1.4.7 |
| reticulate | 1.44.1 -> 1.46 |
| rio | 1.2.4 -> 1.3 |
| rJava | 1.0.11 -> 1.0.18 |
| rlang | 1.1.6 -> 1.2 |
| rlistings | 0.2.12 -> 0.2.13 |
| rmarkdown | 2.3 -> 2.31 |
| rms | 8.1 -> 8.1.1 |
| RobinCar | 1.0 -> 1.2 |
| ROCR | 1.0.11 -> 1.0.12 |
| RODBC | 1.3.26 -> 1.3.26.1 |
| roxygen2 | 7.3.3 -> 8.0 |
| rpart | 4.1.24 -> 4.1.27 |
| rpart.plot | 3.1.3 -> 3.1.4 |
| RPostgres | 1.4.8 -> 1.4.1 |
| rsample | 1.3.1 -> 1.3.2 |
| rsconnect | 1.6.2 -> 1.8 |
| RSQLite | 2.4.5 -> 3.53.1 |
| rstantools | 2.5 -> 2.6 |
| rstudioapi | 0.17.1 -> 0.18 |
| rtables | 0.6.14 -> 0.6.16 |
| rtables.officer | 0.1.1 -> 0.1.2 |
| rxode2 | 5.0 -> 5.1.1 |
| S7 | 0.2.1 -> 0.2.2 |
| selectr | 0.5 -> 0.5.1 |
| set6 | 0.2.4 -> 0.2.6 |
| sf | 1.0.23 -> 1.1.1 |
| shapr | 1.0.6 -> 1.0.8 |
| shiny | 1.11.1 -> 1.13 |
| shinyjs | 2.1 -> 2.1.1 |
| shinytest2 | 0.4.1 -> 0.5.1 |
| shinyWidgets | 0.9 -> 0.9.1 |
| showtext | 0.9.7 -> 0.9.8 |
| skimr | 2.2.1 -> 2.2.2 |
| snowflakeauth | 0.2 -> 0.2.2 |
| sourcetools | 0.1.7.1 -> 0.1.7.2 |
| splines | 4.5.2 -> 4.6 |
| splitstackshape | 1.4.8 -> 1.4.8.1 |
| sqldf | 0.4.11 -> 0.4.12 |
| stats | 4.5.2 -> 4.6 |
| stats4 | 4.5.2 -> 4.6 |
| SuperLearner | 2.0.29 -> 2.0.4 |
| survey | 4.4.8 -> 4.5 |
| survival | 3.8.3 -> 3.8.6 |
| survivalSL | 0.98 -> 1 |
| survminer | 0.5.1 -> 0.5.2 |
| systemfonts | 1.3.1 -> 1.3.2 |
| tcltk | 4.5.2 -> 4.6 |
| tern | 0.9.9 -> 0.9.1 |
| testit | 0.13 -> 1 |
| testthat | 3.3.1 -> 3.3.2 |
| textshaping | 1.0.4 -> 1.0.5 |
| tibble | 3.3 -> 3.3.1 |
| tidycmprsk | 1.1.1 -> 1.1.2 |
| tidymodels | 1.4.1 -> 1.5 |
| tidyr | 1.3.1 -> 1.3.2 |
| tidytlg | 0.10 -> 0.12 |
| timechange | 0.3 -> 0.4 |
| tinytex | 0.58 -> 0.59 |
| tools | 4.5.2 -> 4.6 |
| Tplyr | 1.2.1 -> 1.3.2 |
| treemapify | 2.5.6 -> 2.6 |
| tryCatchLog | 1.3.1 -> 1.3.3 |
| tseries | 0.10.58 -> 0.10.61 |
| tufte | 0.14 -> 0.15 |
| tune | 2.0.1 -> 2.1 |
| utils | 4.5.2 -> 4.6 |
| uuid | 1.2.1 -> 1.2.2 |
| V8 | 8.0.1 -> 8.2 |
| vcdExtra | 0.8.6 -> 0.9.3 |
| vctrs | 0.6.5 -> 0.7.3 |
| vdiffr | 1.0.8 -> 1.0.9 |
| vetiver | 0.2.6 -> 0.2.7 |
| vip | 0.4.1 -> 0.4.6 |
| viridisLite | 0.4.2 -> 0.4.3 |
| vroom | 1.6.7 -> 1.7.1 |
| xfun | 0.54 -> 0.57 |
| xgboost | 1.7.11.1 -> 3.2.1.1 |
| XML | 3.99.0.2 -> 3.99.0.23 |
| xml2 | 1.5.1 -> 1.5.2 |
| xportr | 0.4.3 -> 0.5 |
| xpose | 0.4.22 -> 0.4.23 |
| xtable | 1.8.4 -> 1.8.8 |
| yaImpute | 1.0.34.1 -> 1.0.36 |
| yaml | 2.3.11 -> 2.3.12 |
| yardstick | 1.3.2 -> 1.4 |
| zoo | 1.8.14 -> 1.8.15 |
Removed
- 4 removed packages:
| Package Name | Reason |
|---|---|
| clusterProfiler | In a recent version, the package replaced its DOSE backend with a new dependency,enrichit, that computes GSEA nominal p-values incorrectly. Separately, the seed argument was removed from several functions, so permutation-based results are no longer reproducible. Because these issues affect the correctness and reproducibility of the package's core output, it has been removed for this release. |
| ggalt | Package was archived from CRAN on 2025-08-02 as issues were not corrected despite reminders. This led to it being classified as high risk, and as additional tests were implemented, failures occurred, necessitating its removal. |
| mlr3mbo | While initial validation confirmed the package's outputs against known optimization problems, subsequent package updates caused these tests to fail for unknown reasons. Investigation traced the failures to the package's core model-based optimization functions and uncovered that these functions depend on DiceKriging, a Suggests-level dependency that is not itself validated within OpenVal. Because DiceKriging is not validated, the functions relying on it cannot be tested to a defensible standard. Excluding this functionality from testing would render the remaining coverage of mlr3mbo's functionality insufficient to validate the package properly, leading to its removal. |
| safetyGraphics | The package was archived from CRAN as a result of its dependency Tendril being archived. Tendril failed its CRAN checks due to examples calling deprecated/defunct dplyr functions. Functions in safetyGraphics that call the affected Tendril functions error out under current R, limiting usable functionality and making reliable validation and long-term support impractical, leading to its removal. |
New Dependencies
- 42 new dependency packages:
| Package Name | Version |
|---|---|
| armadillo4r | 0.9.0 |
| arrayhelpers | 1.1-0 |
| base64url | 1.4 |
| batchtools | 0.9.18 |
| bsicons | 0.1.2 |
| cpp4r | 0.6.0 |
| deldir | 2.0-4 |
| dygraphs | 1.1.1.6 |
| egg | 0.4.5 |
| ellmer | 0.4.1 |
| forecast | 9.0.2 |
| fracdiff | 1.5-4 |
| frontmatter | 0.2.0 |
| fst | 0.9.8 |
| fstcore | 0.10.0 |
| GauPro | 0.2.17 |
| geeasy | 0.1.3 |
| geeM | 0.10.1 |
| goftest | 1.2-3 |
| interp | 1.1-6 |
| kinship2 | 1.9.6.2 |
| lbfgs | 1.2.1.2 |
| mcptools | 0.2.1 |
| MESS | 0.6.0 |
| metabook | 0.2-0 |
| miscTools | 0.6-30 |
| mixopt | 0.1.3 |
| pak | 0.9.5 |
| pkgsearch | 3.1.5 |
| rapportools | 1.2 |
| shinystan | 2.7.0 |
| shinyTree | 0.3.1 |
| splines2 | 0.5.4 |
| splitfngr | 0.1.2 |
| svUnit | 1.0.8 |
| teal.logger | 0.4.1 |
| tern.gee | 0.1.5 |
| threejs | 0.3.4 |
| tomledit | 0.1.1 |
| urca | 1.3-4 |
| vistime | 1.3.0 |
| yaml12 | 0.1.0 |
Updated Dependencies
- 94 dependency packages with version updates.
| Package Name | Version Old -> New |
|---|---|
| admisc | 0.39 -> 0.40 |
| AIPW | 0.6.9.2 -> 0.6.9.3 |
| AnnotationDbi | 1.72.0 -> 1.74.0 |
| antiword | 1.3.4 -> 1.3.5 |
| audio | 0.1-11 -> 0.1-12 |
| BayesFactor | 0.9.12-4.7 -> 0.9.12-4.8 |
| bayestestR | 0.17.0 -> 0.18.1 |
| bbotk | 1.8.1 -> 1.10.0 |
| Biobase | 2.70.0 -> 2.72.0 |
| BiocFileCache | 3.0.0 -> 3.2.0 |
| BiocGenerics | 0.56.0 -> 0.58.1 |
| Biostrings | 2.78.0 -> 2.80.1 |
| bundle | 0.1.2 -> 0.1.3 |
| butcher | 0.3.6 -> 0.4.0 |
| collections | 0.3.9 -> 0.3.12 |
| datawizard | 1.3.0 -> 1.3.1 |
| date | 1.2-42 -> 1.2-43 |
| DNAcopy | 1.84.0 -> 1.86.0 |
| effectsize | 1.0.1 -> 1.0.2 |
| exactRankTests | 0.8-35 -> 0.8-37 |
| FactoMineR | 2.12 -> 2.14 |
| flashClust | 1.01-2 -> 1.1-4 |
| ggeffects | 2.3.1 -> 2.3.2 |
| ggfittext | 0.10.2 -> 0.10.3 |
| ggformula | 1.0.0 -> 1.0.1 |
| gggenes | 0.5.1 -> 0.6.0 |
| ggpp | 0.5.9 -> 0.6.0 |
| ggsci | 4.1.0 -> 5.0.0 |
| GlobalOptions | 0.1.3 -> 0.1.4 |
| gmp | 0.7-5 -> 0.7-5.1 |
| GPArotation | 2025.3-1 -> 2026.4-1 |
| graph | 1.88.0 -> 1.90.0 |
| hdnom | 6.1.0 -> 6.2.0 |
| infer | 1.0.9 -> 1.1.0 |
| insight | 1.4.3 -> 1.5.1 |
| IRanges | 2.44.0 -> 2.46.0 |
| KEGGgraph | 1.70.0 -> 1.72.0 |
| KEGGREST | 1.50.0 -> 1.52.0 |
| lgr | 0.5.0 -> 0.5.2 |
| libcoin | 1.0-10 -> 1.0-12 |
| lmom | 3.2 -> 3.3 |
| lobstr | 1.1.3 -> 1.2.1 |
| mets | 1.3.8 -> 1.3.10 |
| minty | 0.0.5 -> 0.0.6 |
| mlbench | 2.1-6 -> 2.1-8 |
| mlr3measures | 1.2.0 -> 1.3.0 |
| mlr3misc | 0.19.0 -> 0.21.0 |
| mnormt | 2.1.1 -> 2.1.2 |
| mosaic | 1.9.2 -> 1.10.2 |
| multcompView | 0.1-10 -> 0.1-11 |
| n1qn1 | 6.0.1-12 -> 6.0.1-14 |
| nleqslv | 3.3.5 -> 3.3.7 |
| nlmixr2plot | 5.0.0 -> 5.0.1 |
| paletteer | 1.6.0 -> 1.7.0 |
| pammtools | 0.7.3 -> 0.7.4 |
| parameters | 0.28.3 -> 0.29.1 |
| pdftools | 3.6.0 -> 3.9.0 |
| performance | 0.15.3 -> 0.17.0 |
| permute | 0.9-8 -> 0.9-10 |
| R2WinBUGS | 2.1-23 -> 2.1-24 |
| RcppCCTZ | 0.2.13 -> 0.2.14 |
| RCurl | 1.98-1.17 -> 1.98-1.18 |
| readODS | 2.3.2 -> 2.3.5 |
| rex | 1.2.1 -> 1.2.2 |
| Rgraphviz | 2.54.0 -> 2.56.0 |
| Rhtslib | 3.6.0 -> 3.8.0 |
| riskRegression | 2025.09.17 -> 2026.03.11 |
| rvg | 0.4.0 -> 0.4.2 |
| rxode2ll | 2.0.13 -> 2.0.14 |
| S4Vectors | 0.48.0 -> 0.50.1 |
| saemix | 3.4 -> 3.5 |
| safetensors | 0.2.0 -> 0.2.1 |
| scam | 1.2-20 -> 1.2-22 |
| scatterplot3d | 0.3-44 -> 0.3-45 |
| Seqinfo | 1.0.0 -> 1.2.0 |
| SimDesign | 2.21 -> 2.25 |
| sp | 2.2-0 -> 2.2-1 |
| stabs | 0.6-4 -> 0.7-1 |
| statmod | 1.5.1 -> 1.5.2 |
| statsExpressions | 1.7.1 -> 2.0.0 |
| stringfish | 0.17.0 -> 0.19.0 |
| swagger | 5.17.14.1 -> 5.32.1 |
| symengine | 0.2.10 -> 0.2.11 |
| terra | 1.8-86 -> 1.9-27 |
| torch | 0.16.3 -> 0.17.0 |
| TSP | 1.2.6 -> 1.2.7 |
| units | 1.0-0 -> 1.0-1 |
| UpSetR | 1.4.0 -> 1.4.1 |
| vegan | 2.7-2 -> 2.7-5 |
| vpc | 1.2.2 -> 1.2.4 |
| warp | 0.2.2 -> 0.2.3 |
| wk | 0.9.4 -> 0.9.5 |
| xts | 0.14.1 -> 0.14.2 |
| XVector | 0.50.0 -> 0.52.0 |
Removed Dependencies
- 43 removed dependency packages:
| Package Name | Version |
|---|---|
| ape | N/A |
| aplot | N/A |
| ash | N/A |
| BiocParallel | N/A |
| cpp11armadillo | N/A |
| datamods | N/A |
| DOSE | N/A |
| enrichplot | N/A |
| extrafont | N/A |
| extrafontdb | N/A |
| fastmatch | N/A |
| fgsea | N/A |
| ggfun | N/A |
| ggplotify | N/A |
| ggtangle | N/A |
| ggtree | N/A |
| GO.db | N/A |
| GOSemSim | N/A |
| GPfit | N/A |
| gson | N/A |
| km.ci | N/A |
| KMsurv | N/A |
| lhs | N/A |
| lmodel2 | N/A |
| maps | N/A |
| mixtools | N/A |
| phosphoricons | N/A |
| plogr | N/A |
| proj4 | N/A |
| qvalue | N/A |
| rclipboard | N/A |
| Rttf2pt1 | N/A |
| safetyCharts | N/A |
| safetyData | N/A |
| scatterpie | N/A |
| segmented | N/A |
| spacefillr | N/A |
| survMisc | N/A |
| Tendril | N/A |
| tidytree | N/A |
| toastui | N/A |
| treeio | N/A |
| yulab.utils | N/A |
Former Dependencies Added to OpenVal
These packages were formerly dependency packages, but as of this release they have been validated and included as new packages in OpenVal.
- 41 dependency packages added to OpenVal:
| Package Name | Version |
|---|---|
| binom | 1.1-1.1 |
| clock | 0.7.4 |
| colourpicker | 1.3.0 |
| CompQuadForm | 1.4.4 |
| diagram | 1.6.5 |
| DiagrammeR | 1.0.12 |
| formatR | 1.14 |
| futile.logger | 1.4.9 |
| futile.options | 1.0.1 |
| future.apply | 1.20.2 |
| globals | 0.19.1 |
| gower | 1.0.2 |
| ipred | 0.9-15 |
| jomo | 2.7-6 |
| lambda.r | 1.2.4 |
| listenv | 0.10.1 |
| mathjaxr | 2.0-0 |
| metadat | 1.6-0 |
| mirai | 2.7.0 |
| mitml | 0.4-5 |
| nanonext | 1.9.0 |
| ordinal | 2025.12-29 |
| pan | 1.9 |
| parallelly | 1.47.0 |
| pbapply | 1.7-4 |
| prodlim | 2026.03.11 |
| progressr | 0.19.0 |
| proxy | 0.4-29 |
| quadprog | 1.5-8 |
| Rglpk | 0.6-5.1 |
| rngtools | 1.5.2 |
| shape | 1.4.6.1 |
| slam | 0.1-55 |
| sortable | 0.6.0 |
| sparsevctrs | 0.3.6 |
| SQUAREM | 2026.1 |
| TH.data | 1.1-5 |
| timeDate | 4052.112 |
| TMB | 1.9.21 |
| ucminf | 1.2.3 |
| waiter | 0.2.5.1 |
OpenVal2026.03.01
Release Date: 2026-06-12
“June 2026 Minor Release”
This is a minor release of OpenVal that builds on the March 2026 major release and includes additional R packages.
- Total packages: 616
- R version: 4.5.2
- Bioconductor version: 3.22
- Package snapshot date: 2025-12-02
New
- 39 new packages:
| Package Name | Version |
|---|---|
| admiraldev | 1.3.1 |
| afex | 1.5.0 |
| AsioHeaders | 1.30.2.1 |
| broom.helpers | 1.22.0 |
| brulee | 0.6.0 |
| bs4Dash | 2.3.5 |
| chromote | 0.5.1 |
| chron | 2.3.62 |
| common | 1.1.3 |
| condformat | 0.10.1 |
| crew | 1.3.0 |
| crew.cluster | 0.4.0 |
| flowchart | 1.0.0 |
| fmtr | 1.7.0 |
| fontBitstreamVera | 0.1.1 |
| fontLiberation | 0.1.0 |
| fontquiver | 0.2.1 |
| future.callr | 0.10.2 |
| gdtools | 0.4.4 |
| gtreg | 0.4.2 |
| histoslider | 0.1.1 |
| kknn | 1.4.1 |
| latex2exp | 0.9.6 |
| lava | 1.8.2 |
| libr | 1.3.9 |
| mrgsolve | 1.6.1 |
| nanotime | 0.3.12 |
| otel | 0.2.0 |
| plumber | 1.3.0 |
| qs2 | 0.1.6 |
| rintrojs | 0.3.4 |
| rio | 1.2.4 |
| rtables.officer | 0.1.1 |
| shinybusy | 0.3.3 |
| shinydashboardPlus | 2.0.6 |
| snowflakeauth | 0.2.0 |
| sparkline | 2 |
| vcdExtra | 0.8.6 |
| webshot2 | 0.1.2 |
Updated
- 0 packages with version updates.
Removed
- 3 removed packages:
| Package Name | Reason |
|---|---|
| assertive | The package is not actively maintained. Additionally, it relies on a complex web of dependencies, including several archived packages, which introduces increased maintenance risk and complicates validation, leading to its removal. |
| assertive.types | The package is not actively maintained. Additionally, it relies on a complex web of dependencies, including several archived packages, which introduces increased maintenance risk and complicates validation, leading to its removal. |
| norm2 | The package is not actively maintained, and user issues are not being monitored. Open issues on the project's repository remain unacknowledged by the author, indicating a lack of ongoing support and increasing long-term maintenance risk, leading to its removal. |
New Dependencies
- 13 new dependency packages:
| Package Name | Version |
|---|---|
| collections | 0.3.9 |
| coro | 1.1.0 |
| gnm | 1.1-5 |
| qvcalc | 1.0.4 |
| RcppCCTZ | 0.2.13 |
| RcppDate | 0.0.6 |
| relimp | 1.0-5 |
| safetensors | 0.2.0 |
| sodium | 1.4.0 |
| swagger | 5.17.14.1 |
| torch | 0.16.3 |
| waiter | 0.2.5.1 |
| webutils | 1.2.2 |
Updated Dependencies
- 0 dependency package with version updates.
Removed Dependencies
- 14 removed dependency packages:
| Package Name | Version |
|---|---|
| assertive.base | N/A |
| assertive.code | N/A |
| assertive.data | N/A |
| assertive.data.uk | N/A |
| assertive.data.us | N/A |
| assertive.datetimes | N/A |
| assertive.files | N/A |
| assertive.matrices | N/A |
| assertive.models | N/A |
| assertive.numbers | N/A |
| assertive.properties | N/A |
| assertive.reflection | N/A |
| assertive.sets | N/A |
| assertive.strings | N/A |
Former Dependencies Added to OpenVal
These packages were formerly dependency packages, but as of this release they have been validated and included as new packages in OpenVal.
- 17 dependency packages added to OpenVal:
| Package Name | Version |
|---|---|
| admiraldev | 1.3.1 |
| afex | 1.5.0 |
| AsioHeaders | 1.30.2.1 |
| chromote | 0.5.1 |
| chron | 2.3.62 |
| common | 1.1.3 |
| fmtr | 1.7.0 |
| fontBitstreamVera | 0.1.1 |
| fontLiberation | 0.1.0 |
| fontquiver | 0.2.1 |
| gdtools | 0.4.4 |
| lava | 1.8.2 |
| otel | 0.2.0 |
| qs2 | 0.1.6 |
| rio | 1.2.4 |
| shinybusy | 0.3.3 |
| snowflakeauth | 0.2.0 |
OpenVal2026.03.00
Release Date: 2026-03-13
“March 2026 Major Release”
This is a major release of OpenVal that builds on the December 2025 minor release and includes an updated R version, updated snapshot date, and additional R packages.
- Total packages: 580
- R version: 4.5.2
- Bioconductor version: 3.22
- Package snapshot date: 2025-12-02
New
- 49 new packages:
| Package Name | Version |
|---|---|
| babelmixr2 | 0.1.11 |
| BayesianMCPMod | 1.2.0 |
| BH | 1.87.0.1 |
| biomaRt | 2.66.0 |
| brew | 1.0.10 |
| broom.mixed | 0.2.9.6 |
| cards | 0.7.0 |
| cardx | 0.3.0 |
| clinify | 0.3.0 |
| distributional | 0.5.0 |
| envsetup | 0.3.0 |
| gestate | 1.6.0 |
| ggridges | 0.5.7 |
| ggstats | 0.11.0 |
| gsDesign | 3.7.0 |
| inline | 0.3.21 |
| iterators | 1.0.14 |
| jsonvalidate | 1.5.0 |
| loo | 2.8.0 |
| matrixStats | 1.5.0 |
| mvnfast | 0.2.8 |
| PKNCA | 0.12.1 |
| polyclip | 1.10.7 |
| posterior | 1.6.1 |
| precrec | 0.14.5 |
| pROC | 1.19.0.1 |
| QuickJSR | 1.8.1 |
| R.cache | 0.17.0 |
| R.methodsS3 | 1.8.2 |
| R.oo | 1.27.1 |
| r2d3 | 0.2.6 |
| RBesT | 1.8.2 |
| RcppParallel | 5.1.11.1 |
| RobinCar | 1.0.0 |
| RPostgres | 1.4.8 |
| rstantools | 2.5.0 |
| sdtmchecks | 1.0.0 |
| shinyFeedback | 0.4.0 |
| shinythemes | 1.2.0 |
| StanHeaders | 2.32.10 |
| survivalSL | 0.98 |
| tensorA | 0.36.2.1 |
| thematic | 0.1.8 |
| tidytext | 0.4.3 |
| tweenr | 2.0.3 |
| vcd | 1.4.13 |
| vegawidget | 0.5.0 |
| workflows | 1.3.0 |
| workflowsets | 1.1.1 |
Updated
- 233 packages with version updates:
| Package Name | Version Old -> New |
|---|---|
| admiral | 1.2 -> 1.3.1 |
| admiralonco | 1.2 -> 1.3 |
| admiralophtha | 1.2 -> 1.3 |
| admiralpeds | 0.2 -> 0.2.1 |
| admiralvaccine | 0.4 -> 0.5 |
| anytime | 0.3.11 -> 0.3.12 |
| aws.s3 | 0.3.21 -> 0.3.22 |
| base | 4.5 -> 4.5.2 |
| bayesplot | 1.12 -> 1.14 |
| BiocManager | 1.30.25 -> 1.30.27 |
| bookdown | 0.43 -> 0.45 |
| boot | 1.3.31 -> 1.3.32 |
| brms | 2.22 -> 2.23 |
| broom | 1.0.8 -> 1.0.1 |
| BuyseTest | 3.2 -> 3.3.4 |
| Cairo | 1.6.2 -> 1.7 |
| CBPS | 0.23 -> 0.24 |
| checkmate | 2.3.2 -> 2.3.3 |
| chevron | 0.2.11 -> 0.2.12 |
| clusterProfiler | 4.16 -> 4.18.2 |
| colorspace | 2.1.1 -> 2.1.2 |
| commonmark | 1.9.5 -> 2.0 |
| compiler | 4.5 -> 4.5.2 |
| corrr | 0.4.4 -> 0.4.5 |
| covr | 3.6.4 -> 3.6.5 |
| cowplot | 1.1.3 -> 1.2 |
| credentials | 2.0.2 -> 2.0.3 |
| crosstable | 0.8.1 -> 0.8.2 |
| crosstalk | 1.2.1 -> 1.2.2 |
| curl | 6.2.2 -> 7.0 |
| DALEX | 2.4.3 -> 2.5.3 |
| data.table | 1.17.2 -> 1.17.8 |
| datasets | 4.5 -> 4.5.2 |
| dbplyr | 2.5 -> 2.5.1 |
| Deriv | 4.1.6 -> 4.2 |
| devtools | 2.4.5 -> 2.4.6 |
| dials | 1.4 -> 1.4.2 |
| diffdf | 1.1.1 -> 1.1.2 |
| digest | 0.6.37 -> 0.6.39 |
| doBy | 4.6.26 -> 4.7 |
| doFuture | 1.0.2 -> 1.1.2 |
| DoseFinding | 1.3.1 -> 1.4.1 |
| downlit | 0.4.4 -> 0.4.5 |
| DT | 0.33 -> 0.34 |
| dtplyr | 1.3.1 -> 1.3.2 |
| dunlin | 0.1.1 -> 0.1.12 |
| emmeans | 1.11.1 -> 2.0 |
| epiR | 2.0.83 -> 2.0.88 |
| evaluate | 1.0.3 -> 1.0.5 |
| exact2x2 | 1.6.9 -> 1.7 |
| fansi | 1.0.6 -> 1.0.7 |
| fitdistrplus | 1.2.2 -> 1.2.4 |
| flextable | 0.9.7 -> 0.9.1 |
| FME | 1.3.6.3 -> 1.3.6.4 |
| forcats | 1.0 -> 1.0.1 |
| forestplot | 3.1.6 -> 3.1.7 |
| fresh | 0.2.1 -> 0.2.2 |
| future | 1.49 -> 1.68 |
| gam | 1.22.5 -> 1.22.6 |
| gargle | 1.5.2 -> 1.6 |
| geepack | 1.3.12 -> 1.3.13 |
| gemtc | 1.0.2 -> 1.1 |
| gert | 2.1.5 -> 2.2 |
| GGally | 2.2.1 -> 2.4 |
| gganimate | 1.0.9 -> 1.0.11 |
| ggbeeswarm | 0.7.2 -> 0.7.3 |
| ggExtra | 0.10.1 -> 0.11 |
| ggforce | 0.4.2 -> 0.5 |
| ggfortify | 0.4.17 -> 0.4.19 |
| ggh4x | 0.3 -> 0.3.1 |
| ggiraph | 0.8.13 -> 0.9.2 |
| ggmcmc | 1.5.1.1 -> 1.5.1.2 |
| ggnewscale | 0.5.1 -> 0.5.2 |
| ggpattern | 1.1.4 -> 1.2.1 |
| ggplot2 | 3.5.2 -> 4.0.1 |
| ggpmisc | 0.6.1 -> 0.6.3 |
| ggPMX | 1.2.11 -> 1.3.2 |
| ggpubr | 0.6 -> 0.6.2 |
| ggstatsplot | 0.13.1 -> 0.13.3 |
| ggsurvfit | 1.1 -> 1.2 |
| ggthemes | 5.1 -> 5.2 |
| gh | 1.4.1 -> 1.5 |
| glmnet | 4.1.8 -> 4.1.1 |
| Gmisc | 3.0.3 -> 3.0.4 |
| googledrive | 2.1.1 -> 2.1.2 |
| googlesheets4 | 1.1.1 -> 1.1.2 |
| gplots | 3.2 -> 3.3 |
| graphics | 4.5 -> 4.5.2 |
| grDevices | 4.5 -> 4.5.2 |
| grid | 4.5 -> 4.5.2 |
| gt | 1.0 -> 1.1 |
| gtsummary | 2.2 -> 2.4 |
| hardhat | 1.4.1 -> 1.4.2 |
| haven | 2.5.4 -> 2.5.5 |
| here | 1.0.1 -> 1.0.2 |
| Hmisc | 5.2.3 -> 5.2.4 |
| hms | 1.1.3 -> 1.1.4 |
| httr2 | 1.1.2 -> 1.2.1 |
| huxtable | 5.6 -> 5.8 |
| IDEAFilter | 0.2 -> 0.2.1 |
| igraph | 2.1.4 -> 2.2.1 |
| keras | 2.15 -> 2.16 |
| keyring | 1.3.2 -> 1.4.1 |
| labelled | 2.14.1 -> 2.16 |
| later | 1.4.2 -> 1.4.4 |
| lemon | 0.5 -> 0.5.2 |
| lintr | 3.2 -> 3.3.0.1 |
| litedown | 0.7 -> 0.8 |
| lotri | 1.0 -> 1.0.2 |
| maftools | 2.24 -> 2.26 |
| magick | 2.8.6 -> 2.9 |
| magrittr | 2.0.3 -> 2.0.4 |
| Matrix | 1.7.3 -> 1.7.4 |
| mediation | 4.5 -> 4.5.1 |
| meta | 8.1 -> 8.2.1 |
| metacore | 0.1.3 -> 0.2.1 |
| metatools | 0.1.6 -> 0.2 |
| methods | 4.5 -> 4.5.2 |
| mgcv | 1.9.3 -> 1.9.4 |
| mice | 3.17 -> 3.18 |
| mirt | 1.44 -> 1.45.1 |
| mlr3 | 0.23 -> 1.2 |
| mlr3learners | 0.12 -> 0.13 |
| mlr3mbo | 0.2.9 -> 0.3.3 |
| mlr3pipelines | 0.7.2 -> 0.10 |
| mlr3tuning | 1.3 -> 1.5 |
| mmrm | 0.3.14 -> 0.3.15 |
| mockery | 0.4.4 -> 0.4.5 |
| multcomp | 1.4.28 -> 1.4.29 |
| nonmem2rx | 0.1.6 -> 0.1.9 |
| odbc | 1.6.1 -> 1.6.3 |
| officedown | 0.4 -> 0.4.1 |
| officer | 0.6.1 -> 0.7.1 |
| openssl | 2.3.2 -> 2.3.4 |
| openxlsx | 4.2.8 -> 4.2.8.1 |
| org.Hs.eg.db | 3.21 -> 3.22 |
| packrat | 0.9.2 -> 0.9.3 |
| pagedown | 0.22 -> 0.23 |
| parallel | 4.5 -> 4.5.2 |
| parsnip | 1.3.1 -> 1.4 |
| patchwork | 1.3 -> 1.3.2 |
| pathview | 1.48 -> 1.50 |
| pbkrtest | 0.5.4 -> 0.5.5 |
| pharmaverseadam | 1.1 -> 1.2 |
| pharmaversesdtm | 1.2 -> 1.3.1 |
| pillar | 1.10.2 -> 1.11.1 |
| pkgbuild | 1.4.7 -> 1.4.8 |
| pkgdown | 2.1.2 -> 2.2 |
| pkgload | 1.4 -> 1.4.1 |
| PKI | 0.1.14 -> 0.1.15 |
| plotly | 4.10.4 -> 4.11 |
| plotrix | 3.8.4 -> 3.8.13 |
| promises | 1.3.2 -> 1.5 |
| psych | 2.5.3 -> 2.5.6 |
| purrr | 1.0.4 -> 1.2 |
| quarto | 1.4.4 -> 1.5.1 |
| r2rtf | 1.1.4 -> 1.2 |
| ragg | 1.4 -> 1.5 |
| randomForestSRC | 3.3.3 -> 3.4.5 |
| ratesci | 0.5 -> 1.0 |
| rbibutils | 2.3 -> 2.4 |
| rbmi | 1.4.1 -> 1.5.2 |
| rcompanion | 2.5 -> 2.5.1 |
| Rcpp | 1.0.14 -> 1.1 |
| RcppArmadillo | 14.4.2.1 -> 15.2.2.1 |
| reactable | 0.4.4 -> 0.4.5 |
| readr | 2.1.5 -> 2.1.6 |
| readtext | 0.91 -> 0.92.1 |
| recipes | 1.3 -> 1.3.1 |
| reformulas | 0.4.1 -> 0.4.2 |
| renv | 1.1.4 -> 1.1.5 |
| reporter | 1.4.4 -> 1.4.5 |
| reshape | 0.8.9 -> 0.8.1 |
| reshape2 | 1.4.4 -> 1.4.5 |
| reticulate | 1.42 -> 1.44.1 |
| rmarkdown | 2.29 -> 2.3 |
| rms | 8.0 -> 8.1 |
| roxygen2 | 7.3.2 -> 7.3.3 |
| rpart.plot | 3.1.2 -> 3.1.3 |
| rprojroot | 2.0.4 -> 2.1.1 |
| rsample | 1.3 -> 1.3.1 |
| rsconnect | 1.4.2 -> 1.6.2 |
| Rsolnp | 1.16 -> 2.0.1 |
| RSQLite | 2.3.11 -> 2.4.5 |
| rtables | 0.6.13 -> 0.6.14 |
| rversions | 2.1.2 -> 3.0 |
| rvest | 1.0.4 -> 1.0.5 |
| rxode2 | 3.0.4 -> 5.0 |
| S7 | 0.2 -> 0.2.1 |
| sdtm.oak | 0.1.1 -> 0.2 |
| selectr | 0.4.2 -> 0.5 |
| sf | 1.0.21 -> 1.0.23 |
| shapr | 1.0.4 -> 1.0.6 |
| shapviz | 0.9.7 -> 0.10.3 |
| shiny | 1.10 -> 1.11.1 |
| sjPlot | 2.8.17 -> 2.9 |
| skimr | 2.1.5 -> 2.2.1 |
| spelling | 2.3.1 -> 2.3.2 |
| splines | 4.5 -> 4.5.2 |
| stats | 4.5 -> 4.5.2 |
| stats4 | 4.5 -> 4.5.2 |
| stringr | 1.5.1 -> 1.6 |
| styler | 1.10.3 -> 1.11 |
| survey | 4.4.2 -> 4.4.8 |
| survminer | 0.5 -> 0.5.1 |
| svglite | 2.2.1 -> 2.2.2 |
| systemfonts | 1.2.3 -> 1.3.1 |
| table1 | 1.4.3 -> 1.5.1 |
| tcltk | 4.5 -> 4.5.2 |
| tern.mmrm | 0.3.2 -> 0.3.3 |
| testthat | 3.2.3 -> 3.3.1 |
| textshaping | 1.0.1 -> 1.0.4 |
| tibble | 3.2.1 -> 3.3 |
| tidycmprsk | 1.1 -> 1.1.1 |
| tidymodels | 1.3 -> 1.4.1 |
| tinytex | 0.57 -> 0.58 |
| tools | 4.5 -> 4.5.2 |
| tufte | 0.13 -> 0.14 |
| tune | 1.3 -> 2.0.1 |
| usethis | 3.1 -> 3.2.1 |
| utf8 | 1.2.5 -> 1.2.6 |
| utils | 4.5 -> 4.5.2 |
| V8 | 6.0.3 -> 8.0.1 |
| vetiver | 0.2.5 -> 0.2.6 |
| vroom | 1.6.5 -> 1.6.7 |
| waldo | 0.6.1 -> 0.6.2 |
| xfun | 0.52 -> 0.54 |
| XML | 3.99.0.18 -> 3.99.0.2 |
| xml2 | 1.3.8 -> 1.5.1 |
| xportr | 0.4.2 -> 0.4.3 |
| xpose | 0.4.19 -> 0.4.22 |
| xpose4 | 4.7.3 -> 4.7.4 |
| yaml | 2.3.1 -> 2.3.11 |
Removed
- 2 removed packages:
| Package Name | Reason |
|---|---|
| qs | The package relies on deprecated internal R serialization APIs that no longer function correctly in recent R versions. The authors have indicated no plans to update or maintain compatibility, leading to its removal. |
| tern.rbmi | All functions in the package are marked as experimental, and the package has been archived from CRAN, increasing maintenance and validation risk and making reliable testing and long-term support impractical for now, leading to its removal. |
New Dependencies
- 42 new dependency packages:
| Package Name | Version |
|---|---|
| AIPW | 0.6.9.2 |
| binom | 1.1-1.1 |
| BiocFileCache | 3.0.0 |
| cubature | 2.1.4-1 |
| date | 1.2-42 |
| emulator | 1.2-24 |
| envnames | 0.4.1 |
| ggformula | 1.0.0 |
| hdnom | 6.1.0 |
| janeaustenr | 1.0.0 |
| kernelshap | 0.9.1 |
| kernlab | 0.9-33 |
| lbfgsb3c | 2024-3.5 |
| lsoda | 1.2 |
| mixtools | 2.0.0.1 |
| monolix2rx | 0.0.6 |
| mosaic | 1.9.2 |
| mosaicCore | 0.9.5 |
| mosaicData | 0.20.4 |
| n1qn1 | 6.0.1-12 |
| ncvreg | 3.16.0 |
| nlmixr2data | 2.0.9 |
| nlmixr2est | 5.0.2 |
| nlmixr2extra | 5.0.0 |
| nlmixr2plot | 5.0.0 |
| otel | 0.2.0 |
| pammtools | 0.7.3 |
| pec | 2025.06.24 |
| penalized | 0.9-53 |
| qs2 | 0.1.6 |
| relsurv | 2.3-3 |
| RISCA | 1.0.7 |
| scam | 1.2-20 |
| segmented | 2.1-4 |
| Seqinfo | 1.0.0 |
| SnowballC | 0.7.1 |
| snowflakeauth | 0.2.0 |
| survivalPLANN | 0.4 |
| symengine | 0.2.10 |
| tailor | 0.1.0 |
| tokenizers | 0.3.0 |
| xgxr | 1.1.2 |
Updated Dependencies
- 121 dependency package with version updates:
| Package Name | Version Old -> New |
|---|---|
| admiraldev | 1.2.0 -> 1.3.1 |
| admisc | 0.38 -> 0.39 |
| afex | 1.4-1 -> 1.5-0 |
| AnnotationDbi | 1.70.0 -> 1.72.0 |
| aplot | 0.2.5 -> 0.2.9 |
| assertive.code | 0.0-4 -> 0.0-3 |
| bayestestR | 0.15.3 -> 0.17.0 |
| bbotk | 1.5.0 -> 1.8.1 |
| Biobase | 2.68.0 -> 2.70.0 |
| BiocGenerics | 0.54.0 -> 0.56.0 |
| BiocParallel | 1.42.0 -> 1.44.0 |
| Biostrings | 2.76.0 -> 2.78.0 |
| bridgesampling | 1.1-2 -> 1.2-1 |
| butcher | 0.3.5 -> 0.3.6 |
| CompQuadForm | 1.4.3 -> 1.4.4 |
| correlation | 0.8.7 -> 0.8.8 |
| cpp11armadillo | 0.5.0 -> 0.5.4 |
| data.tree | 1.1.0 -> 1.2.0 |
| datawizard | 1.1.0 -> 1.3.0 |
| dcurver | 0.9.2 -> 0.9.3 |
| dendextend | 1.19.0 -> 1.19.1 |
| DNAcopy | 1.82.0 -> 1.84.0 |
| DOSE | 4.2.0 -> 4.4.0 |
| effectsize | 1.0.0 -> 1.0.1 |
| elliptic | 1.4-0 -> 1.5-1 |
| enrichplot | 1.28.2 -> 1.30.3 |
| exactci | 1.4-4 -> 1.4-5 |
| extrafont | 0.19 -> 0.20 |
| extrafontdb | 1.0 -> 1.1 |
| FactoMineR | 2.11 -> 2.12 |
| fgsea | 1.34.0 -> 1.36.0 |
| fmtr | 1.6.8 -> 1.7.0 |
| future.apply | 1.11.3 -> 1.20.0 |
| gdtools | 0.4.2 -> 0.4.4 |
| ggeffects | 2.2.1 -> 2.3.1 |
| ggfun | 0.1.8 -> 0.2.0 |
| ggplotify | 0.1.2 -> 0.1.3 |
| ggpp | 0.5.8-1 -> 0.5.9 |
| ggsci | 3.2.0 -> 4.1.0 |
| ggside | 0.3.1 -> 0.4.1 |
| ggtangle | 0.0.6 -> 0.0.9 |
| ggtree | 3.16.0 -> 4.0.1 |
| gld | 2.6.7 -> 2.6.8 |
| GlobalOptions | 0.1.2 -> 0.1.3 |
| GO.db | 3.21.0 -> 3.22.0 |
| GOSemSim | 2.34.0 -> 2.36.0 |
| graph | 1.86.0 -> 1.88.0 |
| infer | 1.0.8 -> 1.0.9 |
| insight | 1.2.0 -> 1.4.3 |
| IRanges | 2.42.0 -> 2.44.0 |
| JavaGD | 0.6-5 -> 0.6-6 |
| KEGGgraph | 1.68.0 -> 1.70.0 |
| KEGGREST | 1.48.0 -> 1.50.0 |
| KMsurv | 0.1-5 -> 0.1-6 |
| kSamples | 1.2-10 -> 1.2-12 |
| lava | 1.8.1 -> 1.8.2 |
| learnr | 0.11.5 -> 0.11.6 |
| lgr | 0.4.4 -> 0.5.0 |
| listenv | 0.9.1 -> 0.10.0 |
| lobstr | 1.1.2 -> 1.1.3 |
| maps | 3.4.2.1 -> 3.4.3 |
| MatchIt | 4.7.1 -> 4.7.2 |
| mathjaxr | 1.8-0 -> 2.0-0 |
| mclust | 6.1.1 -> 6.1.2 |
| mets | 1.3.6 -> 1.3.8 |
| mlr3measures | 1.0.0 -> 1.2.0 |
| mlr3misc | 0.17.0 -> 0.19.0 |
| modeldata | 1.4.0 -> 1.5.1 |
| parallelly | 1.44.0 -> 1.45.1 |
| parameters | 0.25.0 -> 0.28.3 |
| pbapply | 1.7-2 -> 1.7-4 |
| pdftools | 3.5.0 -> 3.6.0 |
| performance | 0.13.0 -> 0.15.3 |
| permute | 0.9-7 -> 0.9-8 |
| pheatmap | 1.0.12 -> 1.0.13 |
| progressr | 0.15.1 -> 0.18.0 |
| Publish | 2023.01.17 -> 2025.07.24 |
| qpdf | 1.3.5 -> 1.4.1 |
| quantmod | 0.4.27 -> 0.4.28 |
| qvalue | 2.40.0 -> 2.42.0 |
| R2WinBUGS | 2.1-22.1 -> 2.1-23 |
| Rgraphviz | 2.52.0 -> 2.54.0 |
| Rhtslib | 3.4.0 -> 3.6.0 |
| rio | 1.2.3 -> 1.2.4 |
| riskRegression | 2025.05.15 -> 2025.09.17 |
| Rmpfr | 1.1-0 -> 1.1-2 |
| rstatix | 0.7.2 -> 0.7.3 |
| rstpm2 | 1.6.7 -> 1.7.1 |
| Rttf2pt1 | 1.3.12 -> 1.3.14 |
| rvg | 0.3.5 -> 0.4.0 |
| s2 | 1.1.8 -> 1.1.9 |
| S4Vectors | 0.46.0 -> 0.48.0 |
| saemix | 3.3 -> 3.4 |
| scatterpie | 0.2.4 -> 0.2.6 |
| seriation | 1.5.7 -> 1.5.8 |
| SimDesign | 2.19.2 -> 2.21 |
| sjmisc | 2.8.10 -> 2.8.11 |
| sjstats | 0.19.0 -> 0.19.1 |
| slider | 0.3.2 -> 0.3.3 |
| sparsevctrs | 0.3.3 -> 0.3.4 |
| statmod | 1.5.0 -> 1.5.1 |
| statsExpressions | 1.7.0 -> 1.7.1 |
| stringfish | 0.16.0 -> 0.17.0 |
| tensorflow | 2.16.0 -> 2.20.0 |
| terra | 1.8-50 -> 1.8-86 |
| tfruns | 1.5.3 -> 1.5.4 |
| TH.data | 1.1-3 -> 1.1-5 |
| timeDate | 4041.110 -> 4051.111 |
| timereg | 2.0.6 -> 2.0.7 |
| TMB | 1.9.17 -> 1.9.18 |
| treeio | 1.32.0 -> 1.34.0 |
| TSP | 1.2-4 -> 1.2.6 |
| units | 0.8-7 -> 1.0-0 |
| vegan | 2.6-10 -> 2.7-2 |
| visNetwork | 2.1.2 -> 2.1.4 |
| warp | 0.2.1 -> 0.2.2 |
| WRS2 | 1.1-6 -> 1.1-7 |
| xlsxjars | 0.6.1 -> 0.9.0 |
| XVector | 0.48.0 -> 0.50.0 |
| yulab.utils | 0.2.0 -> 0.2.2 |
| zeallot | 0.1.0 -> 0.2.0 |
Removed Dependencies
- 11 removed dependency packages:
| Package Name | Version |
|---|---|
| forecast | NA |
| fracdiff | NA |
| GenomeInfoDb | NA |
| GenomeInfoDbData | NA |
| kknn | NA |
| pak | NA |
| RApiSerialize | NA |
| sodium | NA |
| UCSC.utils | NA |
| urca | NA |
| zlibbioc | NA |
Former Dependencies Added to OpenVal
These packages were formerly dependency packages, but as of this release they have been validated and included as new packages in OpenVal.
- 24 dependency packages added to OpenVal:
| Package Name | Version |
|---|---|
| BH | 1.87.0.1 |
| brew | 1.0.10 |
| cards | 0.7.0 |
| distributional | 0.5.0 |
| ggridges | 0.5.7 |
| ggstats | 0.11.0 |
| inline | 0.3.21 |
| iterators | 1.0.14 |
| loo | 2.8.0 |
| matrixStats | 1.5.0 |
| polyclip | 1.10.7 |
| posterior | 1.6.1 |
| pROC | 1.19.0.1 |
| QuickJSR | 1.8.1 |
| R.cache | 0.17.0 |
| R.methodsS3 | 1.8.2 |
| R.oo | 1.27.1 |
| RcppParallel | 5.1.11.1 |
| rstantools | 2.5.0 |
| StanHeaders | 2.32.10 |
| tensorA | 0.36.2.1 |
| tweenr | 2.0.3 |
| workflows | 1.3.0 |
| workflowsets | 1.1.1 |
OpenVal2025.09.01
Release Date: 2025-12-15
“December 2025 Minor Release”
This is a minor release of OpenVal that builds on the September 2025 major release and includes additional R packages.
- Total packages: 533
- R version: 4.5.0
- Bioconductor version: 3.21
- Package snapshot date: 2025-05-16
New
- 19 new packages:
| Package Name | Version |
|---|---|
| admiralophtha | 1.2.0 |
| admiralpeds | 0.2.0 |
| admiralvaccine | 0.4.0 |
| epitools | 0.5.10.1 |
| Exact | 3.3 |
| exact2x2 | 1.6.9 |
| fmsb | 0.7.6 |
| ini | 0.3.1 |
| longpower | 1.0.27 |
| magick | 2.8.6 |
| parsnip | 1.3.1 |
| pharmaverseadam | 1.1.0 |
| recipes | 1.3.0 |
| rmass2 | 0.0.0.2 |
| rsample | 1.3.0 |
| rversions | 2.1.2 |
| S7 | 0.2.0 |
| tune | 1.3.0 |
| xopen | 1.0.1 |
Updated
- 0 packages with version updates.
Removed
- 0 removed packages.
New Dependencies
- 7 new dependency packages:
| Package Name | Version |
|---|---|
| exactci | 1.4-4 |
| forecast | 8.24.0 |
| fracdiff | 1.5-3 |
| mirai | 2.5.3 |
| nanonext | 1.7.2 |
| ssanv | 1.1 |
| urca | 1.3-4 |
Updated Dependencies
- 0 dependency package with version updates.
Removed Dependencies
- 4 removed dependency packages:
| Package Name | Version |
|---|---|
| BiocVersion | NA |
| RTCGA | NA |
| RTCGA.clinical | NA |
| valtools | NA |
Former Dependencies Added to OpenVal
These packages were formerly dependency packages, but as of this release they have been validated and included as new packages in OpenVal.
- 10 dependency packages added to OpenVal:
| Package Name | Version |
|---|---|
| Exact | 3.3 |
| ini | 0.3.1 |
| magick | 2.8.6 |
| parsnip | 1.3.1 |
| recipes | 1.3.0 |
| rsample | 1.3.0 |
| rversions | 2.1.2 |
| S7 | 0.2.0 |
| tune | 1.3.0 |
| xopen | 1.0.1 |
OpenVal2025.09.00
Release Date: 2025-09-12
“September 2025 Major Release”
This is a major release of OpenVal that builds on the June 2025 minor release and includes an updated R version, updated snapshot date, and additional R packages. Additionally, support for Ubuntu 24.04 has been added and support for Ubuntu 20.04 has been removed.
- Total packages: 514
- R version: 4.5.0
- Bioconductor version: 3.21
- Package snapshot date: 2025-05-16
New
- 64 new packages:
| Package Name | Version |
|---|---|
| base64enc | 0.1.3 |
| bigD | 0.3.1 |
| billboarder | 0.5.0 |
| bit | 4.6.0 |
| bitops | 1.0.9 |
| chevron | 0.2.11 |
| clipr | 0.8.0 |
| clusterProfiler | 4.16.0 |
| compareDF | 2.3.5 |
| config | 0.3.2 |
| conflicted | 1.2.0 |
| curl | 6.2.2 |
| Deriv | 4.1.6 |
| dotenv | 1.0.3 |
| dtplyr | 1.3.1 |
| dunlin | 0.1.10 |
| fansi | 1.0.6 |
| formatters | 0.5.11 |
| Formula | 1.2.5 |
| ggiraphExtra | 0.3.0 |
| highr | 0.11 |
| jose | 1.2.1 |
| juicyjuice | 0.1.0 |
| labeling | 0.4.3 |
| litedown | 0.7 |
| MatrixModels | 0.5.4 |
| mime | 0.13 |
| modelr | 0.1.11 |
| nnls | 1.6 |
| openssl | 2.3.2 |
| org.Hs.eg.db | 3.21.0 |
| packrat | 0.9.2 |
| pathview | 1.48.0 |
| pins | 1.4.1 |
| PKI | 0.1.14 |
| praise | 1.0.0 |
| quantreg | 6.1 |
| rbibutils | 2.3 |
| RcppEigen | 0.3.4.0.2 |
| RcppTOML | 0.2.3 |
| Rdpack | 2.6.4 |
| reactR | 0.6.1 |
| reformulas | 0.4.1 |
| renv | 1.1.4 |
| reporter | 1.4.4 |
| Rsolnp | 1.16 |
| safetyGraphics | 2.1.1 |
| sdtm.oak | 0.1.1 |
| selectr | 0.4.2 |
| sf | 1.0.21 |
| shinytest2 | 0.4.1 |
| shinyvalidate | 0.1.3 |
| sourcetools | 0.1.7.1 |
| SparseM | 1.84.2 |
| SuperLearner | 2.0.29 |
| sys | 3.4.3 |
| systemfonts | 1.2.3 |
| textshaping | 1.0.1 |
| timechange | 0.3.0 |
| utf8 | 1.2.5 |
| uuid | 1.2.1 |
| V8 | 6.0.3 |
| waldo | 0.6.1 |
| whisker | 0.4.1 |
Updated
- 194 packages with version updates.
| Package Name | Version Old -> New |
|---|---|
| admiral | 1.1.1 -> 1.2.0 |
| admiralonco | 1.1.0 -> 1.2.0 |
| anytime | 0.3.9 -> 0.3.11 |
| ARTool | 0.11.1 -> 0.11.2 |
| base | 4.4.2 -> 4.5.0 |
| bayesplot | 1.11.1 -> 1.12.0 |
| bit64 | 4.5.2 -> 4.6.0.1 |
| bizdays | 1.0.16 -> 1.0.17 |
| bookdown | 0.41 -> 0.43 |
| broom | 1.0.7 -> 1.0.8 |
| bslib | 0.8.0 -> 0.9.0 |
| BuyseTest | 3.0.5 -> 3.2.0 |
| caret | 6.0.94 -> 7.0.1 |
| censored | 0.3.2 -> 0.3.3 |
| class | 7.3.22 -> 7.3.23 |
| cli | 3.6.3 -> 3.6.5 |
| cluster | 2.1.6 -> 2.1.8.1 |
| commonmark | 1.9.2 -> 1.9.5 |
| compiler | 4.4.2 -> 4.5.0 |
| cpp11 | 0.5.0 -> 0.5.2 |
| data.table | 1.16.2 -> 1.17.2 |
| datasets | 4.4.2 -> 4.5.0 |
| depmixS4 | 1.5.0 -> 1.5.1 |
| dials | 1.3.0 -> 1.4.0 |
| diffobj | 0.3.5 -> 0.3.6 |
| doBy | 4.6.24 -> 4.6.26 |
| doFuture | 1.0.1 -> 1.0.2 |
| doRNG | 1.8.6 -> 1.8.6.2 |
| DoseFinding | 1.2.1 -> 1.3.1 |
| emmeans | 1.10.5 -> 1.11.1 |
| epiR | 2.0.76 -> 2.0.83 |
| evaluate | 1.0.1 -> 1.0.3 |
| fastDummies | 1.7.4 -> 1.7.5 |
| fitdistrplus | 1.2.1 -> 1.2.2 |
| flexsurvcure | 1.3.1 -> 1.3.3 |
| fontawesome | 0.5.2 -> 0.5.3 |
| foreign | 0.8.87 -> 0.8.90 |
| forestplot | 3.1.5 -> 3.1.6 |
| fs | 1.6.5 -> 1.6.6 |
| future | 1.34.0 -> 1.49.0 |
| generics | 0.1.3 -> 0.1.4 |
| gert | 2.1.4 -> 2.1.5 |
| ggdist | 3.3.2 -> 3.3.3 |
| ggh4x | 0.2.8 -> 0.3.0 |
| ggiraph | 0.8.10 -> 0.8.13 |
| ggnewscale | 0.5.0 -> 0.5.1 |
| ggpattern | 1.1.1 -> 1.1.4 |
| ggplot2 | 3.5.1 -> 3.5.2 |
| ggpmisc | 0.6.0 -> 0.6.1 |
| ggstatsplot | 0.12.5 -> 0.13.1 |
| graphics | 4.4.2 -> 4.5.0 |
| grDevices | 4.4.2 -> 4.5.0 |
| grid | 4.4.2 -> 4.5.0 |
| gt | 0.11.1 -> 1.0.0 |
| gtsummary | 2.0.3 -> 2.2.0 |
| hardhat | 1.4.0 -> 1.4.1 |
| Hmisc | 5.2.0 -> 5.2.3 |
| httpuv | 1.6.15 -> 1.6.16 |
| httr2 | 1.0.6 -> 1.1.2 |
| huxtable | 5.5.7 -> 5.6.0 |
| igraph | 2.1.1 -> 2.1.4 |
| iml | 0.11.3 -> 0.11.4 |
| janitor | 2.2.0 -> 2.2.1 |
| jinjar | 0.3.1 -> 0.3.2 |
| jpeg | 0.1.10 -> 0.1.11 |
| jsonlite | 1.8.9 -> 2.0.0 |
| KernSmooth | 2.23.24 -> 2.23.26 |
| knitr | 1.48 -> 1.50 |
| labelled | 2.13.0 -> 2.14.1 |
| later | 1.3.2 -> 1.4.2 |
| lattice | 0.22.6 -> 0.22.7 |
| lemon | 0.4.9 -> 0.5.0 |
| lintr | 3.1.2 -> 3.2.0 |
| lme4 | 1.1.35.5 -> 1.1.37 |
| logr | 1.3.8 -> 1.3.9 |
| logrx | 0.3.1 -> 0.4.0 |
| lubridate | 1.9.3 -> 1.9.4 |
| maftools | 2.22.0 -> 2.24.0 |
| markdown | 1.13 -> 2.0 |
| MASS | 7.3.61 -> 7.3.65 |
| Matrix | 1.7.1 -> 1.7.3 |
| meta | 8.0.1 -> 8.1.0 |
| metafor | 4.6.0 -> 4.8.0 |
| methods | 4.4.2 -> 4.5.0 |
| mgcv | 1.9.1 -> 1.9.3 |
| mice | 3.16.0 -> 3.17.0 |
| miniUI | 0.1.1.1 -> 0.1.2 |
| mirt | 1.42 -> 1.44.0 |
| mkin | 1.2.6 -> 1.2.10 |
| mlr3 | 0.21.1 -> 0.23.0 |
| mlr3learners | 0.8.0 -> 0.12.0 |
| mlr3mbo | 0.2.6 -> 0.2.9 |
| mlr3pipelines | 0.7.0 -> 0.7.2 |
| mlr3tuning | 1.1.0 -> 1.3.0 |
| mlr3viz | 0.10.0 -> 0.10.1 |
| modeltools | 0.2.23 -> 0.2.24 |
| multcomp | 1.4.26 -> 1.4.28 |
| mvtnorm | 1.3.2 -> 1.3.3 |
| nestcolor | 0.1.2 -> 0.1.3 |
| networkD3 | 0.4 -> 0.4.1 |
| nlme | 3.1.166 -> 3.1.168 |
| nloptr | 2.1.1 -> 2.2.1 |
| nnet | 7.3.19 -> 7.3.20 |
| nonmem2rx | 0.1.5 -> 0.1.6 |
| odbc | 1.5.0 -> 1.6.1 |
| officedown | 0.3.3 -> 0.4.0 |
| officer | 0.6.7 -> 0.6.10 |
| openxlsx | 4.2.7.1 -> 4.2.8 |
| pagedown | 0.21 -> 0.22 |
| pander | 0.6.5 -> 0.6.6 |
| parallel | 4.4.2 -> 4.5.0 |
| partykit | 1.2.22 -> 1.2.24 |
| pbkrtest | 0.5.3 -> 0.5.4 |
| pharmaversesdtm | 1.1.0 -> 1.2.0 |
| pillar | 1.9.0 -> 1.10.2 |
| pkgbuild | 1.4.5 -> 1.4.7 |
| pkgdown | 2.1.1 -> 2.1.2 |
| pkglite | 0.2.3 -> 0.2.4 |
| processx | 3.8.4 -> 3.8.6 |
| promises | 1.3.0 -> 1.3.2 |
| ps | 1.8.1 -> 1.9.1 |
| pspline | 1.0.20 -> 1.0.21 |
| psych | 2.4.6.26 -> 2.5.3 |
| purrr | 1.0.2 -> 1.0.4 |
| qs | 0.27.2 -> 0.27.3 |
| R.utils | 2.12.3 -> 2.13.0 |
| r2rtf | 1.1.1 -> 1.1.4 |
| R6 | 2.5.1 -> 2.6.1 |
| ragg | 1.3.3 -> 1.4.0 |
| randomForestSRC | 3.3.1 -> 3.3.3 |
| ranger | 0.16.0 -> 0.17.0 |
| raster | 3.6.30 -> 3.6.32 |
| ratesci | 0.4.0 -> 0.5.0 |
| rbmi | 1.3.0 -> 1.4.1 |
| rcompanion | 2.4.36 -> 2.5.0 |
| Rcpp | 1.0.13.1 -> 1.0.14 |
| RcppArmadillo | 14.0.2.1 -> 14.4.2.1 |
| readxl | 1.4.3 -> 1.4.5 |
| reportr | 1.3.0 -> 1.3.1 |
| reticulate | 1.39.0 -> 1.42.0 |
| rjags | 4.16 -> 4.17 |
| rlang | 1.1.4 -> 1.1.6 |
| rlistings | 0.2.9 -> 0.2.12 |
| rms | 6.8.2 -> 8.0.0 |
| RODBC | 1.3.23 -> 1.3.26 |
| rpart | 4.1.23 -> 4.1.24 |
| RPostgreSQL | 0.7.7 -> 0.7.8 |
| rsconnect | 1.3.2 -> 1.4.2 |
| RSQLite | 2.3.7 -> 2.3.11 |
| rstan | 2.32.6 -> 2.32.7 |
| rtables | 0.6.10 -> 0.6.13 |
| runjags | 2.2.2.4 -> 2.2.2.5 |
| rxode2 | 3.0.2 -> 3.0.4 |
| sass | 0.4.9 -> 0.4.10 |
| savvyr | 0.1.1 -> 0.1.2 |
| scales | 1.3.0 -> 1.4.0 |
| sessioninfo | 1.2.2 -> 1.2.3 |
| shapr | 0.2.2 -> 1.0.4 |
| shapviz | 0.9.6 -> 0.9.7 |
| shiny | 1.9.1 -> 1.10.0 |
| shinydashboard | 0.7.2 -> 0.7.3 |
| shinyWidgets | 0.8.7 -> 0.9.0 |
| sjPlot | 2.8.16 -> 2.8.17 |
| spatial | 7.3.17 -> 7.3.18 |
| splines | 4.4.2 -> 4.5.0 |
| stats | 4.4.2 -> 4.5.0 |
| stats4 | 4.4.2 -> 4.5.0 |
| stringi | 1.8.4 -> 1.8.7 |
| survival | 3.7.0 -> 3.8.3 |
| svglite | 2.1.3 -> 2.2.1 |
| tcltk | 4.4.2 -> 4.5.0 |
| tern | 0.9.6 -> 0.9.9 |
| tern.rbmi | 0.1.4 -> 0.1.5 |
| testthat | 3.2.1.1 -> 3.2.3 |
| tidymodels | 1.2.0 -> 1.3.0 |
| tidytlg | 0.1.5 -> 0.10.0 |
| tinytex | 0.54 -> 0.57 |
| tools | 4.4.2 -> 4.5.0 |
| tzdb | 0.4.0 -> 0.5.0 |
| usethis | 3.0.0 -> 3.1.0 |
| utils | 4.4.2 -> 4.5.0 |
| vtable | 1.4.7 -> 1.4.8 |
| withr | 2.5.2 -> 3.0.2 |
| writexl | 1.5.1 -> 1.5.4 |
| xfun | 0.49 -> 0.52 |
| xgboost | 1.7.8.1 -> 1.7.11.1 |
| XML | 3.99.0.17 -> 3.99.0.18 |
| xml2 | 1.3.6 -> 1.3.8 |
| xportr | 0.4.1 -> 0.4.2 |
| xpose | 0.4.18 -> 0.4.19 |
| xslt | 1.4.6 -> 1.5.1 |
| yardstick | 1.3.1 -> 1.3.2 |
| zip | 2.3.1 -> 2.3.3 |
| zoo | 1.8.12 -> 1.8.14 |
Removed
- 4 removed packages.
| Package Name | Reason |
|---|---|
| extrafont | The package was archived on CRAN, is minimally maintained, and has reliability issues in restricted environments, making consistent validation and long-term support impractical, resulting in its removal. |
| Rmpi | The package caused testing to hang in certain environments and relies on MPI libraries that are difficult to support consistently across platforms. Due to these issues and challenges with reliable validation, the package was removed. |
| rpact | Key validation resources are behind a commercial paywall. Without access to these materials, we cannot independently validate the package, leading to its removal. |
| summarytools | The package produced inconsistently formatted outputs when using standard rendering methods such as the RStudio `Knit` option, `rmarkdown::render()`, and when tested with {testthat}. These inconsistencies caused snapshot tests to change unexpectedly and triggered warnings not seen during manual runs. Due to this volatility and its impact on testing reliability, the package was removed. |
New Dependencies
- 58 new dependency packages:
| Package Name | Version |
|---|---|
| AnnotationDbi | 1.70.0 |
| ape | 5.8-1 |
| aplot | 0.2.5 |
| Biobase | 2.68.0 |
| BiocGenerics | 0.54.0 |
| BiocParallel | 1.42.0 |
| Biostrings | 2.76.0 |
| cvAUC | 1.1.4 |
| datamods | 1.5.3 |
| DOSE | 4.2.0 |
| enrichplot | 1.28.2 |
| extrafont | 0.19 |
| fastmatch | 1.1-6 |
| fgsea | 1.34.0 |
| fmtr | 1.6.8 |
| formatR | 1.14 |
| futile.logger | 1.4.3 |
| futile.options | 1.0.1 |
| GenomeInfoDb | 1.44.0 |
| GenomeInfoDbData | 1.2.14 |
| ggfun | 0.1.8 |
| ggplotify | 0.1.2 |
| ggtangle | 0.0.6 |
| ggtree | 3.16.0 |
| GO.db | 3.21.0 |
| GOSemSim | 2.34.0 |
| graph | 1.86.0 |
| gridGraphics | 0.5-1 |
| gson | 0.1.0 |
| IRanges | 2.42.0 |
| KEGGgraph | 1.68.0 |
| KEGGREST | 1.48.0 |
| kknn | 1.4.1 |
| lambda.r | 1.2.4 |
| learnr | 0.11.5 |
| mycor | 0.1.1 |
| phosphoricons | 0.2.1 |
| pingr | 2.0.5 |
| ppcor | 1.1 |
| qvalue | 2.40.0 |
| rclipboard | 0.2.1 |
| Rgraphviz | 2.52.0 |
| rio | 1.2.3 |
| S4Vectors | 0.46.0 |
| S7 | 0.2.0 |
| safetyCharts | 0.3.0 |
| safetyData | 1.0.0 |
| scatterpie | 0.2.4 |
| shinybusy | 0.3.3 |
| sortable | 0.5.0 |
| sparsevctrs | 0.3.3 |
| Tendril | 2.0.4 |
| tidytree | 0.4.6 |
| toastui | 0.4.0 |
| treeio | 1.32.0 |
| UCSC.utils | 1.4.0 |
| XVector | 0.48.0 |
| yulab.utils | 0.2.0 |
Updated Dependencies
- 101 dependency package with version updates:
| Package Name | Version Old -> New |
|---|---|
| admiraldev | 1.1.0 -> 1.2.0 |
| admisc | 0.36 -> 0.38 |
| AsioHeaders | 1.22.1-2 -> 1.30.2-1 |
| bayestestR | 0.15.0 -> 0.15.3 |
| bbotk | 1.2.0 -> 1.5.0 |
| BH | 1.84.0-0 -> 1.87.0-1 |
| BiocVersion | 3.20.0 -> 3.21.1 |
| bundle | 0.1.1 -> 0.1.2 |
| butcher | 0.3.4 -> 0.3.5 |
| cards | 0.3.0 -> 0.6.0 |
| chk | 0.9.2 -> 0.10.0 |
| chromote | 0.5.0 -> 0.5.1 |
| chron | 2.3-61 -> 2.3-62 |
| classInt | 0.4-10 -> 0.4-11 |
| clock | 0.7.1 -> 0.7.3 |
| correlation | 0.8.6 -> 0.8.7 |
| cpp11armadillo | 0.3.3 -> 0.5.0 |
| datawizard | 0.13.0 -> 1.1.0 |
| dendextend | 1.18.1 -> 1.19.0 |
| DescTools | 0.99.57 -> 0.99.60 |
| DNAcopy | 1.80.0 -> 1.82.0 |
| effectsize | 0.8.9 -> 1.0.0 |
| etm | 1.1.1 -> 1.1.2 |
| gclus | 1.3.2 -> 1.3.3 |
| gdtools | 0.4.1 -> 0.4.2 |
| ggeffects | 1.7.2 -> 2.2.1 |
| ggstats | 0.7.0 -> 0.9.0 |
| gld | 2.6.6 -> 2.6.7 |
| globals | 0.16.3 -> 0.18.0 |
| gower | 1.0.1 -> 1.0.2 |
| GPArotation | 2024.3-1 -> 2025.3-1 |
| GPfit | 1.0-8 -> 1.0-9 |
| gridpattern | 1.2.2 -> 1.3.1 |
| hunspell | 3.0.5 -> 3.0.6 |
| hypergeo | 1.2-13 -> 1.2-14 |
| infer | 1.0.7 -> 1.0.8 |
| inline | 0.3.19 -> 0.3.21 |
| insight | 0.20.5 -> 1.2.0 |
| lava | 1.8.0 -> 1.8.1 |
| lmodel2 | 1.7-3 -> 1.7-4 |
| lpSolve | 5.6.21 -> 5.6.23 |
| magick | 2.8.5 -> 2.8.6 |
| maps | 3.4.2 -> 3.4.2.1 |
| MatchIt | 4.5.5 -> 4.7.1 |
| mathjaxr | 1.6-0 -> 1.8-0 |
| matrixStats | 1.4.1 -> 1.5.0 |
| maxstat | 0.7-25 -> 0.7-26 |
| metadat | 1.2-0 -> 1.4-0 |
| mets | 1.3.4 -> 1.3.6 |
| minty | 0.0.1 -> 0.0.5 |
| mlbench | 2.1-5 -> 2.1-6 |
| mlr3misc | 0.15.1 -> 0.17.0 |
| ndjson | 0.9.0 -> 0.9.1 |
| ore | 1.7.4.1 -> 1.7.5.1 |
| pak | 0.8.0 -> 0.8.0.2 |
| parallelly | 1.38.0 -> 1.44.0 |
| parameters | 0.23.0 -> 0.25.0 |
| parsnip | 1.2.1 -> 1.3.1 |
| pdftools | 3.4.1 -> 3.5.0 |
| performance | 0.12.4 -> 0.13.0 |
| posterior | 1.6.0 -> 1.6.1 |
| prodlim | 2024.06.25 -> 2025.04.28 |
| progressr | 0.15.0 -> 0.15.1 |
| proj4 | 1.0-14 -> 1.0-15 |
| PRROC | 1.3.1 -> 1.4 |
| qpdf | 1.3.4 -> 1.3.5 |
| quantmod | 0.4.26 -> 0.4.27 |
| QuickJSR | 1.4.0 -> 1.7.0 |
| R.cache | 0.16.0 -> 0.17.0 |
| R.oo | 1.27.0 -> 1.27.1 |
| RcppParallel | 5.1.9 -> 5.1.10 |
| RCurl | 1.98-1.16 -> 1.98-1.17 |
| readODS | 2.3.1 -> 2.3.2 |
| recipes | 1.1.0 -> 1.3.0 |
| Rhtslib | 3.2.0 -> 3.4.0 |
| riskRegression | 2023.12.21 -> 2025.05.15 |
| Rmpfr | 0.9-5 -> 1.1-0 |
| rsample | 1.2.1 -> 1.3.0 |
| rstpm2 | 1.6.6 -> 1.6.7 |
| RTCGA | 1.36.0 -> 1.38.0 |
| RTCGA.clinical | 20151101.36.0 -> 20151101.38.0 |
| rvg | 0.3.4 -> 0.3.5 |
| rxode2ll | 2.0.11 -> 2.0.13 |
| s2 | 1.1.7 -> 1.1.8 |
| seriation | 1.5.6 -> 1.5.7 |
| SimDesign | 2.17.1 -> 2.19.2 |
| slam | 0.1-54 -> 0.1-55 |
| sodium | 1.3.2 -> 1.4.0 |
| sp | 2.1-4 -> 2.2-0 |
| spacefillr | 0.3.3 -> 0.4.0 |
| statsExpressions | 1.6.1 -> 1.7.0 |
| SuppDists | 1.1-9.8 -> 1.1-9.9 |
| terra | 1.7-83 -> 1.8-50 |
| TH.data | 1.1-2 -> 1.1-3 |
| TMB | 1.9.15 -> 1.9.17 |
| tune | 1.2.1 -> 1.3.0 |
| units | 0.8-5 -> 0.8-7 |
| vegan | 2.6-8 -> 2.6-10 |
| websocket | 1.4.2 -> 1.4.4 |
| workflows | 1.1.4 -> 1.2.0 |
| zlibbioc | 1.52.0 -> 1.54.0 |
Removed Dependencies
- 7 removed dependency packages:
| Package Name | Version |
|---|---|
| condMVNorm | NA |
| git2r | NA |
| mvnfast | NA |
| pryr | NA |
| rapportools | NA |
| RPushbullet | NA |
| waiter | NA |
Former Dependencies Added to OpenVal
These packages were formerly dependency packages, but as of this release they have been validated and included as new packages in OpenVal.
- 46 dependency packages added to OpenVal:
| Package Name | Version |
|---|---|
| base64enc | 0.1.3 |
| bigD | 0.3.1 |
| bit | 4.6.0 |
| bitops | 1.0.9 |
| clipr | 0.8.0 |
| config | 0.3.2 |
| conflicted | 1.2.0 |
| curl | 6.2.2 |
| Deriv | 4.1.6 |
| dtplyr | 1.3.1 |
| fansi | 1.0.6 |
| formatters | 0.5.11 |
| Formula | 1.2.5 |
| highr | 0.11 |
| juicyjuice | 0.1.0 |
| labeling | 0.4.3 |
| MatrixModels | 0.5.4 |
| mime | 0.13 |
| modelr | 0.1.11 |
| nnls | 1.6 |
| openssl | 2.3.2 |
| packrat | 0.9.2 |
| pins | 1.4.1 |
| PKI | 0.1.14 |
| praise | 1.0.0 |
| quantreg | 6.1 |
| rbibutils | 2.3 |
| RcppEigen | 0.3.4.0.2 |
| RcppTOML | 0.2.3 |
| Rdpack | 2.6.4 |
| reactR | 0.6.1 |
| renv | 1.1.4 |
| Rsolnp | 1.16 |
| selectr | 0.4.2 |
| sf | 1.0.21 |
| sourcetools | 0.1.7.1 |
| SparseM | 1.84.2 |
| sys | 3.4.3 |
| systemfonts | 1.2.3 |
| textshaping | 1.0.1 |
| timechange | 0.3.0 |
| utf8 | 1.2.5 |
| uuid | 1.2.1 |
| V8 | 6.0.3 |
| waldo | 0.6.1 |
| whisker | 0.4.1 |
OpenVal2025.03.01
Release Date: 2025-08-04
“June 2025 Minor Release”
This is a minor release of OpenVal that builds on the March 2025 major release and includes additional R packages.
- Total packages: 454
- R version: 4.4.2
- Bioconductor version: 3.20
- Package snapshot date: 2024-11-07
New
- 25 new packages:
| Package Name | Version |
|---|---|
| abind | 1.4.8 |
| BuyseTest | 3.0.5 |
| carData | 3.0.5 |
| diffobj | 0.3.5 |
| farver | 2.1.2 |
| flexsurvcure | 1.3.1 |
| forestplot | 3.1.5 |
| geex | 1.1.1 |
| ids | 1.0.1 |
| isoband | 0.2.7 |
| ldbounds | 2.0.2 |
| log4r | 0.4.4 |
| logr | 1.3.8 |
| mkin | 1.2.6 |
| nonmem2rx | 0.1.5 |
| PWEALL | 1.3.0.1 |
| ratesci | 0.4.0 |
| reportr | 1.3.0 |
| rms | 6.8.2 |
| rmt | 1 |
| rootSolve | 1.8.2.4 |
| sandwich | 3.1.1 |
| summarytools | 1.0.1 |
| tidylog | 1.1.0 |
| treemapify | 2.5.6 |
Updated
- 0 packages with version updates.
Removed
- 0 removed packages.
New Dependencies
- 16 new dependency packages:
| Package Name | Version |
|---|---|
| clisymbols | 1.2.0 |
| common | 1.1.3 |
| doSNOW | 1.0.20 |
| magick | 2.8.5 |
| mclust | 6.1.1 |
| mets | 1.3.4 |
| npde | 3.5 |
| ore | 1.7.4.1 |
| polspline | 1.1.25 |
| pryr | 0.1.6 |
| Publish | 2023.01.17 |
| rapportools | 1.1 |
| riskRegression | 2023.12.21 |
| saemix | 3.3 |
| timereg | 2.0.6 |
| valtools | 0.4.1 |
Updated Dependencies
- 1 dependency package with version updates:
| Package Name | Version Old -> New |
|---|---|
| chromote | 0.5.0.9000 -> 0.5.0 |
Removed Dependencies
- 3 removed dependency packages:
| Package Name | Version |
|---|---|
| GenSA | NA |
| msm | NA |
| OpenVal | NA |
Former Dependencies Added to OpenVal
These packages were formerly dependency packages, but as of this release they have been validated and included as new packages in OpenVal.
- 9 dependency packages added to OpenVal:
| Package Name | Version |
|---|---|
| abind | 1.4.8 |
| carData | 3.0.5 |
| diffobj | 0.3.5 |
| farver | 2.1.2 |
| forestplot | 3.1.5 |
| ids | 1.0.1 |
| isoband | 0.2.7 |
| rootSolve | 1.8.2.4 |
| sandwich | 3.1.1 |
OpenVal2025.03.00
Release Date: 2025-03-28
“March 2025 Major Release”
This is a major release of OpenVal that builds on the December 2024 minor release and includes an updated R version, updated snapshot date, additional R packages, and a removed package. Additionally, support for RHEL 9 has been added.
- Total packages: 429
- R version: 4.4.2
- Bioconductor version: 3.20
- Package snapshot date: 2024-11-07
New
- 14 new packages:
| Package Name | Version |
|---|---|
| coxphw | 4.0.3 |
| geepack | 1.3.12 |
| httr2 | 1.0.6 |
| nestcolor | 0.1.2 |
| officedown | 0.3.3 |
| R2jags | 0.8-9 |
| rJava | 1.0-11 |
| savvyr | 0.1.1 |
| survey | 4.4-2 |
| tern.mmrm | 0.3.2 |
| tern.rbmi | 0.1.4 |
| treemap | 2.4-4 |
| tryCatchLog | 1.3.1 |
| writexl | 1.5.1 |
Updated
- 145 packages with version updates:
| Package Name | Version Old -> New |
|---|---|
| askpass | 1.2.0 -> 1.2.1 |
| base | 4.4.1 -> 4.4.2 |
| BiocManager | 1.30.23 -> 1.30.25 |
| bit64 | 4.0.5 -> 4.5.2 |
| bookdown | 0.39 -> 0.41 |
| boot | 1.3-30 -> 1.3-31 |
| brms | 2.21.0 -> 2.22.0 |
| broom | 1.0.6 -> 1.0.7 |
| bslib | 0.7.0 -> 0.8.0 |
| car | 3.1-2 -> 3.1-3 |
| checkmate | 2.3.1 -> 2.3.2 |
| colorspace | 2.1-0 -> 2.1-1 |
| commonmark | 1.9.1 -> 1.9.2 |
| compiler | 4.4.1 -> 4.4.2 |
| corrplot | 0.92 -> 0.95 |
| cpp11 | 0.4.7 -> 0.5.0 |
| credentials | 2.0.1 -> 2.0.2 |
| crosstable | 0.7.0 -> 0.8.1 |
| data.table | 1.15.4 -> 1.16.2 |
| datasets | 4.4.1 -> 4.4.2 |
| dials | 1.2.1 -> 1.3.0 |
| diffdf | 1.0.4 -> 1.1.1 |
| digest | 0.6.35 -> 0.6.37 |
| doBy | 4.6.22 -> 4.6.24 |
| DoseFinding | 1.1-1 -> 1.2-1 |
| e1071 | 1.7-14 -> 1.7-16 |
| emmeans | 1.10.2 -> 1.10.5 |
| epiR | 2.0.75 -> 2.0.76 |
| evaluate | 0.24.0 -> 1.0.1 |
| fastDummies | 1.7.3 -> 1.7.4 |
| fitdistrplus | 1.1-11 -> 1.2-1 |
| flexsurv | 2.3 -> 2.3.2 |
| flextable | 0.9.6 -> 0.9.7 |
| foreign | 0.8-86 -> 0.8-87 |
| fresh | 0.2.0 -> 0.2.1 |
| fs | 1.6.4 -> 1.6.5 |
| future | 1.33.2 -> 1.34.0 |
| gam | 1.22-3 -> 1.22-5 |
| gdata | 3.0.0 -> 3.0.1 |
| gert | 2.0.1 -> 2.1.4 |
| ggnewscale | 0.4.10 -> 0.5.0 |
| ggpmisc | 0.5.6 -> 0.6.0 |
| ggrepel | 0.9.5 -> 0.9.6 |
| ggstatsplot | 0.12.3 -> 0.12.5 |
| glue | 1.7.0 -> 1.8.0 |
| golem | 0.4.1 -> 0.5.1 |
| gplots | 3.1.3.1 -> 3.2.0 |
| graphics | 4.4.1 -> 4.4.2 |
| grDevices | 4.4.1 -> 4.4.2 |
| grid | 4.4.1 -> 4.4.2 |
| gt | 0.10.1 -> 0.11.1 |
| gtable | 0.3.5 -> 0.3.6 |
| gtsummary | 1.7.2 -> 2.0.3 |
| Hmisc | 5.1-3 -> 5.2-0 |
| htmlTable | 2.4.2 -> 2.4.3 |
| huxtable | 5.5.6 -> 5.5.7 |
| igraph | 2.0.3 -> 2.1.1 |
| jsonlite | 1.8.8 -> 1.8.9 |
| knitr | 1.47 -> 1.48 |
| lme4 | 1.1-35.4 -> 1.1-35.5 |
| lotri | 0.4.3 -> 1.0.0 |
| Matrix | 1.7-0 -> 1.7-1 |
| meta | 7.0-0 -> 8.0-1 |
| metatools | 0.1.5 -> 0.1.6 |
| methods | 4.4.1 -> 4.4.2 |
| microbenchmark | 1.4.10 -> 1.5.0 |
| minqa | 1.2.7 -> 1.2.8 |
| mirt | 1.41 -> 1.42 |
| mlr3 | 0.19.0 -> 0.21.1 |
| mlr3learners | 0.6.0 -> 0.8.0 |
| mlr3mbo | 0.2.2 -> 0.2.6 |
| mlr3pipelines | 0.5.2 -> 0.7.0 |
| mlr3tuning | 0.20.0 -> 1.1.0 |
| mlr3viz | 0.8.0 -> 0.10.0 |
| mmrm | 0.3.11 -> 0.3.14 |
| multcomp | 1.4-25 -> 1.4-26 |
| mvtnorm | 1.2-5 -> 1.3-2 |
| nlme | 3.1-165 -> 3.1-166 |
| nloptr | 2.1.0 -> 2.1.1 |
| officer | 0.6.6 -> 0.6.7 |
| openxlsx | 4.2.5.2 -> 4.2.7.1 |
| pagedown | 0.20 -> 0.21 |
| parallel | 4.4.1 -> 4.4.2 |
| partykit | 1.2-20 -> 1.2-22 |
| patchwork | 1.2.0 -> 1.3.0 |
| pbkrtest | 0.5.2 -> 0.5.3 |
| pharmaversesdtm | 1.0.0 -> 1.1.0 |
| pkgbuild | 1.4.4 -> 1.4.5 |
| pkgdown | 2.0.9 -> 2.1.1 |
| pkglite | 0.2.2 -> 0.2.3 |
| pkgload | 1.3.4 -> 1.4.0 |
| PMCMRplus | 1.9.10 -> 1.9.12 |
| PopED | 0.6.0 -> 0.7.0 |
| profvis | 0.3.8 -> 0.4.0 |
| ps | 1.7.6 -> 1.8.1 |
| psych | 2.4.3 -> 2.4.6.26 |
| qs | 0.26.3 -> 0.27.2 |
| quarto | 1.4 -> 1.4.4 |
| ragg | 1.3.2 -> 1.3.3 |
| randomForest | 4.7-1.1 -> 4.7-1.2 |
| randomForestSRC | 3.2.3 -> 3.3.1 |
| raster | 3.6-26 -> 3.6-30 |
| rbmi | 1.2.6 -> 1.3.0 |
| Rcpp | 1.0.12 -> 1.0.13-1 |
| RcppArmadillo | 0.12.8.4.0 -> 14.0.2-1 |
| reprex | 2.1.0 -> 2.1.1 |
| reticulate | 1.38.0 -> 1.39.0 |
| rjags | 4-15 -> 4-16 |
| rjson | 0.2.21 -> 0.2.23 |
| rmarkdown | 2.27 -> 2.29 |
| Rmpi | 0.7-2 -> 0.7-2.1 |
| roxygen2 | 7.3.1 -> 7.3.2 |
| rpact | 4.0.0 -> 4.1.0 |
| RPostgreSQL | 0.7-6 -> 0.7-7 |
| rsconnect | 1.3.1 -> 1.3.2 |
| rstudioapi | 0.16.0 -> 0.17.1 |
| rtables | 0.6.8 -> 0.6.10 |
| rxode2 | 2.1.3 -> 3.0.2 |
| servr | 0.30 -> 0.32 |
| shapviz | 0.9.3 -> 0.9.6 |
| shiny | 1.8.1.1 -> 1.9.1 |
| shinycssloaders | 1.0.0 -> 1.1.0 |
| shinyWidgets | 0.8.6 -> 0.8.7 |
| spelling | 2.3.0 -> 2.3.1 |
| splines | 4.4.1 -> 4.4.2 |
| stats | 4.4.1 -> 4.4.2 |
| stats4 | 4.4.1 -> 4.4.2 |
| survminer | 0.4.9 -> 0.5.0 |
| tcltk | 4.4.1 -> 4.4.2 |
| tern | 0.9.5 -> 0.9.6 |
| tidycmprsk | 1.0.0 -> 1.1.0 |
| tinytex | 0.51 -> 0.54 |
| tools | 4.4.1 -> 4.4.2 |
| tseries | 0.10-56 -> 0.10-58 |
| usethis | 2.2.3 -> 3.0.0 |
| utils | 4.4.1 -> 4.4.2 |
| vdiffr | 1.0.7 -> 1.0.8 |
| vtable | 1.4.6 -> 1.4.7 |
| xfun | 0.45 -> 0.49 |
| xgboost | 1.7.7.1 -> 1.7.8.1 |
| XML | 3.99-0.16.1 -> 3.99-0.17 |
| xportr | 0.4.0 -> 0.4.1 |
| xslt | 1.4.5 -> 1.4.6 |
| yaImpute | 1.0-34 -> 1.0-34.1 |
| yaml | 2.3.8 -> 2.3.10 |
Removed
- 1 removed package:
| Package Name | Reason |
|---|---|
| ggimage | The package depends on making requests to remote servers or repositories to retrieve images for plots. However, the instability of these links caused inconsistent test failures, which led to the decision for it's removal. |
New Dependencies
- 18 new dependency packages:
| Package Name | Version |
|---|---|
| audio | 0.1-11 |
| beepr | 2 |
| cards | 0.3.0 |
| chromote | 0.5.0.9000 |
| cpp11armadillo | 0.3.3 |
| etm | 1.1.1 |
| GenSA | 1.1.14.1 |
| git2r | 0.33.0 |
| gridBase | 0.4-7 |
| mitools | 2.4 |
| msm | 1.8.2 |
| pak | 0.8.0 |
| pheatmap | 1.0.12 |
| R2WinBUGS | 2.1-22.1 |
| RPushbullet | 0.3.4 |
| rvg | 0.3.4 |
| sfd | 0.1.0 |
| SimDesign | 2.17.1 |
Updated Dependencies
- 98 dependency packages with version updates:
| Package Name | Version Old -> New |
|---|---|
| abind | 1.4-5 -> 1.4-8 |
| admisc | 0.35 -> 0.36 |
| afex | 1.3-1 -> 1.4-1 |
| antiword | 1.3.3 -> 1.3.4 |
| bayestestR | 0.13.2 -> 0.15.0 |
| bbotk | 0.8.0 -> 1.2.0 |
| bit | 4.0.5 -> 4.5.0 |
| bitops | 1.0-7 -> 1.0-9 |
| caTools | 1.18.2 -> 1.18.3 |
| chk | 0.9.1 -> 0.9.2 |
| clock | 0.7.0 -> 0.7.1 |
| correlation | 0.8.5 -> 0.8.6 |
| curl | 5.2.1 -> 6.0.0 |
| datawizard | 0.11.0 -> 0.13.0 |
| dendextend | 1.17.1 -> 1.18.1 |
| Deriv | 4.1.3 -> 4.1.6 |
| DescTools | 0.99.54 -> 0.99.57 |
| distributional | 0.4.0 -> 0.5.0 |
| DNAcopy | 1.78.0 -> 1.80.0 |
| dparser | 1.3.1-11 -> 1.3.1-13 |
| effectsize | 0.8.8 -> 0.8.9 |
| Exact | 3.2 -> 3.3 |
| expm | 0.999-9 -> 1.0-0 |
| forestplot | 3.1.3 -> 3.1.5 |
| formatters | 0.5.8 -> 0.5.9 |
| future.apply | 1.11.2 -> 1.11.3 |
| gdtools | 0.3.7 -> 0.4.1 |
| ggeffects | 1.7.0 -> 1.7.2 |
| ggpp | 0.5.7 -> 0.5.8-1 |
| ggstats | 0.6.0 -> 0.7.0 |
| gmp | 0.7-4 -> 0.7-5 |
| hunspell | 3.0.3 -> 3.0.5 |
| insight | 0.20.1 -> 0.20.5 |
| ipred | 0.9-14 -> 0.9-15 |
| lhs | 1.1.6 -> 1.2.0 |
| lmom | 3.0 -> 3.2 |
| loo | 2.7.0 -> 2.8.0 |
| lpSolve | 5.6.20 -> 5.6.21 |
| matrixStats | 1.3.0 -> 1.4.1 |
| mboost | 2.9-10 -> 2.9-11 |
| mlr3measures | 0.5.0 -> 1.0.0 |
| mlr3misc | 0.15.0 -> 0.15.1 |
| modelenv | 0.1.1 -> 0.2.0 |
| mstate | 0.3.2 -> 0.3.3 |
| nnls | 1.5 -> 1.6 |
| openssl | 2.2.0 -> 2.2.2 |
| ordinal | 2023.12-4 -> 2023.12-4.1 |
| paradox | 1.0.0 -> 1.0.1 |
| parallelly | 1.37.1 -> 1.38.0 |
| parameters | 0.22.0 -> 0.23.0 |
| pdftools | 3.4.0 -> 3.4.1 |
| performance | 0.12.0 -> 0.12.4 |
| pins | 1.3.0 -> 1.4.0 |
| polyclip | 1.10-6 -> 1.10-7 |
| posterior | 1.5.0 -> 1.6.0 |
| PreciseSums | 0.6 -> 0.7 |
| prodlim | 2023.08.28 -> 2024.06.25 |
| progressr | 0.14.0 -> 0.15.0 |
| qpdf | 1.3.3 -> 1.3.4 |
| quantreg | 5.98 -> 5.99 |
| QuickJSR | 1.2.2 -> 1.4.0 |
| R.oo | 1.26.0 -> 1.27.0 |
| RApiSerialize | 0.1.3 -> 0.1.4 |
| rbibutils | 2.2.16 -> 2.3 |
| RcppEigen | 0.3.4.0.0 -> 0.3.4.0.2 |
| RcppParallel | 5.1.7 -> 5.1.9 |
| RCurl | 1.98-1.14 -> 1.98-1.16 |
| Rdpack | 2.6 -> 2.6.1 |
| reactR | 0.5.0 -> 0.6.1 |
| readODS | 2.3.0 -> 2.3.1 |
| recipes | 1.0.10 -> 1.1.0 |
| renv | 1.0.7 -> 1.0.11 |
| Rhtslib | 3.0.0 -> 3.2.0 |
| rstpm2 | 1.6.3 -> 1.6.6 |
| s2 | 1.1.6 -> 1.1.7 |
| sandwich | 3.1-0 -> 3.1-1 |
| seriation | 1.5.5 -> 1.5.6 |
| sf | 1.0-16 -> 1.0-19 |
| slam | 0.1-50 -> 0.1-54 |
| slider | 0.3.1 -> 0.3.2 |
| sodium | 1.3.1 -> 1.3.2 |
| SparseM | 1.83 -> 1.84-2 |
| StanHeaders | 2.32.9 -> 2.32.10 |
| statsExpressions | 1.5.4 -> 1.6.1 |
| SuppDists | 1.1-9.7 -> 1.1-9.8 |
| sys | 3.4.2 -> 3.4.3 |
| terra | 1.7-78 -> 1.7-83 |
| timeDate | 4032.109 -> 4041.110 |
| TMB | 1.9.12 -> 1.9.15 |
| ucminf | 1.2.1 -> 1.2.2 |
| uuid | 1.2-0 -> 1.2-1 |
| V8 | 4.4.2 -> 6.0.0 |
| vegan | 2.6-6.1 -> 2.6-8 |
| waldo | 0.5.2 -> 0.6.0 |
| websocket | 1.4.1 -> 1.4.2 |
| wk | 0.9.1 -> 0.9.4 |
| xts | 0.14.0 -> 0.14.1 |
| zlibbioc | 1.50.0 -> 1.52.0 |
Removed Dependencies
- 43 removed dependency packages:
| Package Name | Version |
|---|---|
| Biobase | NA |
| BiocGenerics | NA |
| BiocIO | NA |
| BiocParallel | NA |
| Biostrings | NA |
| broom.helpers | NA |
| BSgenome | NA |
| BSgenome.Hsapiens.UCSC.hg19 | NA |
| crul | NA |
| DelayedArray | NA |
| formatR | NA |
| futile.logger | NA |
| futile.options | NA |
| GenomeInfoDb | NA |
| GenomeInfoDbData | NA |
| GenomicAlignments | NA |
| GenomicRanges | NA |
| gfonts | NA |
| ggfun | NA |
| ggplotify | NA |
| gridGraphics | NA |
| httpcode | NA |
| IRanges | NA |
| lambda.r | NA |
| magick | NA |
| MatrixGenerics | NA |
| restfulr | NA |
| RhpcBLASctl | NA |
| Rsamtools | NA |
| rtracklayer | NA |
| rxode2et | NA |
| rxode2parse | NA |
| rxode2random | NA |
| S4Arrays | NA |
| S4Vectors | NA |
| SparseArray | NA |
| SummarizedExperiment | NA |
| symengine | NA |
| triebeard | NA |
| UCSC.utils | NA |
| urltools | NA |
| XVector | NA |
| yulab.utils | NA |
Former Dependencies Added to OpenVal
These packages were formerly dependency packages, but as of this release they have been validated and included as new packages in OpenVal.
- 2 dependency packages added to OpenVal:
| Package Name | Version |
|---|---|
| httr2 | 1.0.6 |
| rJava | 1.0-11 |
OpenVal2024.09.01
Release Date: 2024-12-13
“December 2024 Minor Release”
This is a minor release of OpenVal that builds on the September 2024 major release and includes additional R packages.
- Total packages: 416
- R version: 4.4.1
- Package snapshot date: 2024-06-22
New
- 9 new packages:
| Package Name | Version |
|---|---|
| admiralonco | 1.1.0 |
| furrr | 0.3.1 |
| gam | 1.22-3 |
| ggiraph | 0.8.10 |
| jinjar | 0.3.1 |
| norm | 1.0-11.1 |
| rhandsontable | 0.3.8 |
| RSQLite | 2.3.7 |
| shinyWidgets | 0.8.6 |
OpenVal2024.09.00
Release Date: 2024-10-02
“September 2024 Major Release”
This is a major release of OpenVal that builds on the June 2024 minor release and includes an updated R version, updated snapshot date, additional R packages, and a removed package.
- Total packages: 407
- R version: 4.4.1
- Package snapshot date: 2024-06-22
New
- 17 new packages:
| Package Name | Version |
|---|---|
| admiral | 1.1.1 |
| cmprsk | 2.2-12 |
| corrr | 0.4.4 |
| ftExtra | 0.6.4 |
| ggmcmc | 1.5.1.1 |
| IDEAFilter | 0.2.0 |
| networkD3 | 0.4 |
| Rfit | 0.27.0 |
| rjson | 0.2.21 |
| rlistings | 0.2.9 |
| rtables | 0.6.8 |
| shinyalert | 3.1.0 |
| shinycssloaders | 1.0.0 |
| shinyjs | 2.1.0 |
| tern | 0.9.5 |
| tidycmprsk | 1.0.0 |
| tidytlg | 0.1.5 |
Updated
- 217 packages with version updates:
| Package Name | Version Old -> New |
|---|---|
| arm | 1.13-1 -> 1.14-4 |
| backports | 1.4.1 -> 1.5.0 |
| base | 4.3.2 -> 4.4.1 |
| bayesplot | 1.10.0 -> 1.11.1 |
| BiocManager | 1.30.22 -> 1.30.23 |
| bizdays | 1.0.13 -> 1.0.16 |
| bookdown | 0.36 -> 0.39 |
| boot | 1.3-28.1 -> 1.3-30 |
| brio | 1.1.3 -> 1.1.5 |
| brms | 2.20.4 -> 2.21.0 |
| broom | 1.0.5 -> 1.0.6 |
| bslib | 0.5.1 -> 0.7.0 |
| cachem | 1.0.8 -> 1.1.0 |
| Cairo | 1.6-1 -> 1.6-2 |
| callr | 3.7.3 -> 3.7.6 |
| censored | 0.2.0 -> 0.3.2 |
| checkmate | 2.3.0 -> 2.3.1 |
| circlize | 0.4.15 -> 0.4.16 |
| cli | 3.6.1 -> 3.6.3 |
| cluster | 2.1.4 -> 2.1.6 |
| coda | 0.19-4 -> 0.19-4.1 |
| codetools | 0.2-19 -> 0.2-20 |
| commonmark | 1.9.0 -> 1.9.1 |
| compiler | 4.3.2 -> 4.4.1 |
| consort | 1.2.1 -> 1.2.2 |
| cowplot | 1.1.1 -> 1.1.3 |
| cpp11 | 0.4.6 -> 0.4.7 |
| crayon | 1.5.2 -> 1.5.3 |
| crosstalk | 1.2.0 -> 1.2.1 |
| data.table | 1.14.8 -> 1.15.4 |
| datasets | 4.3.2 -> 4.4.1 |
| DBI | 1.1.3 -> 1.2.3 |
| dbplyr | 2.4.0 -> 2.5.0 |
| debugme | 1.1.0 -> 1.2.0 |
| desc | 1.4.2 -> 1.4.3 |
| deSolve | 1.38 -> 1.40 |
| dials | 1.2.0 -> 1.2.1 |
| digest | 0.6.33 -> 0.6.35 |
| doBy | 4.6.20 -> 4.6.22 |
| doFuture | 1.0.0 -> 1.0.1 |
| downlit | 0.4.3 -> 0.4.4 |
| DT | 0.30 -> 0.33 |
| e1071 | 1.7-13 -> 1.7-14 |
| emmeans | 1.8.9 -> 1.10.2 |
| epiR | 2.0.65 -> 2.0.75 |
| estimability | 1.4.1 -> 1.5.1 |
| evaluate | 0.23 -> 0.24.0 |
| extraDistr | 1.9.1 -> 1.10.0 |
| fastmap | 1.1.1 -> 1.2.0 |
| fastshap | 0.1.0 -> 0.1.1 |
| flexsurv | 2.2.2 -> 2.3 |
| flextable | 0.9.4 -> 0.9.6 |
| foreign | 0.8-85 -> 0.8-86 |
| fs | 1.6.3 -> 1.6.4 |
| future | 1.33.0 -> 1.33.2 |
| gert | 2.0.0 -> 2.0.1 |
| GGally | 2.1.2 -> 2.2.1 |
| gganimate | 1.0.8 -> 1.0.9 |
| ggdendro | 0.1.23 -> 0.2.0 |
| ggdist | 3.3.0 -> 3.3.2 |
| ggforce | 0.4.1 -> 0.4.2 |
| ggfortify | 0.4.16 -> 0.4.17 |
| ggh4x | 0.2.6 -> 0.2.8 |
| ggnewscale | 0.4.9 -> 0.4.10 |
| ggpattern | 1.0.1 -> 1.1.1 |
| ggplot2 | 3.4.4 -> 3.5.1 |
| ggpmisc | 0.5.5 -> 0.5.6 |
| ggPMX | 1.2.10 -> 1.2.11 |
| ggrepel | 0.9.4 -> 0.9.5 |
| ggstatsplot | 0.12.1 -> 0.12.3 |
| ggsurvfit | 1.0.0 -> 1.1.0 |
| ggthemes | 4.2.4 -> 5.1.0 |
| gh | 1.4.0 -> 1.4.1 |
| glue | 1.6.2 -> 1.7.0 |
| gMCP | 0.8-15 -> 0.8-17 |
| gmodels | 2.18.1.1 -> 2.19.1 |
| gplots | 3.1.3 -> 3.1.3.1 |
| graphics | 4.3.2 -> 4.4.1 |
| grDevices | 4.3.2 -> 4.4.1 |
| grid | 4.3.2 -> 4.4.1 |
| gt | 0.10.0 -> 0.10.1 |
| gtable | 0.3.4 -> 0.3.5 |
| gtools | 3.9.4 -> 3.9.5 |
| hardhat | 1.3.0 -> 1.4.0 |
| haven | 2.5.3 -> 2.5.4 |
| Hmisc | 5.1-1 -> 5.1-3 |
| hrbrthemes | 0.8.0 -> 0.8.7 |
| htmltools | 0.5.7 -> 0.5.8.1 |
| htmlwidgets | 1.6.2 -> 1.6.4 |
| httpuv | 1.6.12 -> 1.6.15 |
| huxtable | 5.5.2 -> 5.5.6 |
| igraph | 1.5.1 -> 2.0.3 |
| iml | 0.11.1 -> 0.11.3 |
| jsonlite | 1.8.7 -> 1.8.8 |
| keras | 2.13.0 -> 2.15.0 |
| KernSmooth | 2.23-22 -> 2.23-24 |
| keyring | 1.3.1 -> 1.3.2 |
| knitr | 1.45 -> 1.47 |
| labelled | 2.12.0 -> 2.13.0 |
| later | 1.3.1 -> 1.3.2 |
| lattice | 0.22-5 -> 0.22-6 |
| lemon | 0.4.7 -> 0.4.9 |
| lintr | 3.1.1 -> 3.1.2 |
| lme4 | 1.1-35.1 -> 1.1-35.4 |
| logrx | 0.3.0 -> 0.3.1 |
| maftools | 2.18.0 -> 2.20.0 |
| markdown | 1.11 -> 1.13 |
| MASS | 7.3-60 -> 7.3-61 |
| Matrix | 1.6-3 -> 1.7-0 |
| meta | 6.5-0 -> 7.0-0 |
| metacore | 0.1.2 -> 0.1.3 |
| metafor | 4.4-0 -> 4.6-0 |
| methods | 4.3.2 -> 4.4.1 |
| mgcv | 1.9-0 -> 1.9-1 |
| minqa | 1.2.6 -> 1.2.7 |
| mlr3 | 0.17.0 -> 0.19.0 |
| mlr3learners | 0.5.6 -> 0.6.0 |
| mlr3mbo | 0.2.1 -> 0.2.2 |
| mlr3pipelines | 0.5.0-1 -> 0.5.2 |
| mlr3tuning | 0.19.0 -> 0.20.0 |
| mlr3viz | 0.6.1 -> 0.8.0 |
| mmrm | 0.3.6 -> 0.3.11 |
| munsell | 0.5.0 -> 0.5.1 |
| mvtnorm | 1.2-3 -> 1.2-5 |
| naniar | 1.0.0 -> 1.1.0 |
| nlme | 3.1-163 -> 3.1-165 |
| nloptr | 2.0.3 -> 2.1.0 |
| odbc | 1.3.5 -> 1.5.0 |
| officer | 0.6.3 -> 0.6.6 |
| parallel | 4.3.2 -> 4.4.1 |
| patchwork | 1.1.3 -> 1.2.0 |
| pharmaversesdtm | 0.1.1 -> 1.0.0 |
| pkgbuild | 1.4.2 -> 1.4.4 |
| pkgdown | 2.0.7 -> 2.0.9 |
| pkglite | 0.2.1 -> 0.2.2 |
| pkgload | 1.3.3 -> 1.3.4 |
| plotly | 4.10.3 -> 4.10.4 |
| PMCMRplus | 1.9.8 -> 1.9.10 |
| processx | 3.8.2 -> 3.8.4 |
| progress | 1.2.2 -> 1.2.3 |
| promises | 1.2.1 -> 1.3.0 |
| ps | 1.7.5 -> 1.7.6 |
| pscl | 1.5.5.1 -> 1.5.9 |
| pspline | 1.0-19 -> 1.0-20 |
| psych | 2.3.9 -> 2.4.3 |
| qs | 0.25.5 -> 0.26.3 |
| quarto | 1.3 -> 1.4 |
| ragg | 1.2.6 -> 1.3.2 |
| randomForestSRC | 3.2.2 -> 3.2.3 |
| rbmi | 1.2.5->1.2.6 |
| rcompanion | 2.4.34 -> 2.4.36 |
| Rcpp | 1.0.11 -> 1.0.12 |
| RcppArmadillo | 0.12.6.6.0 -> 0.12.8.4.0 |
| readr | 2.1.4 -> 2.1.5 |
| readtext | 0.90 -> 0.91 |
| remotes | 2.4.2.1 -> 2.5.0 |
| reprex | 2.0.2 -> 2.1.0 |
| reticulate | 1.34.0 -> 1.38.0 |
| rjags | 4-14 -> 4-15 |
| rlang | 1.1.2->1.1.4 |
| rmarkdown | 2.25 -> 2.27 |
| Rmpi | 0.7-1 -> 0.7-2 |
| RODBC | 1.3-21 -> 1.3-23 |
| roxygen2 | 7.2.3 -> 7.3.1 |
| rpact | 3.4.0 -> 4.0.0 |
| rpart | 4.1.21 -> 4.1.23 |
| rpart.plot | 3.1.1 -> 3.1.2 |
| RPostgreSQL | 0.7-5 -> 0.7-6 |
| rsconnect | 1.1.1 -> 1.3.1 |
| rstan | 2.32.3 -> 2.32.6 |
| rstudioapi | 0.15.0 -> 0.16.0 |
| runjags | 2.2.2-1.1 -> 2.2.2-4 |
| rvest | 1.0.3 -> 1.0.4 |
| rxode2 | 2.0.14 -> 2.1.3 |
| sass | 0.4.7 -> 0.4.9 |
| scales | 1.2.1 -> 1.3.0 |
| servr | 0.27 -> 0.30 |
| shapviz | 0.9.2 -> 0.9.3 |
| shiny | 1.8.0 -> 1.8.1.1 |
| showtext | 0.9-6 -> 0.9-7 |
| sjPlot | 2.8.15 -> 2.8.16 |
| spelling | 2.2.1 -> 2.3.0 |
| splines | 4.3.2 -> 4.4.1 |
| stats | 4.3.2 -> 4.4.1 |
| stats4 | 4.3.2 -> 4.4.1 |
| stringi | 1.8.1 -> 1.8.4 |
| styler | 1.10.2 -> 1.10.3 |
| survival | 3.5-7 -> 3.7-0 |
| svglite | 2.1.2 -> 2.1.3 |
| sysfonts | 0.8.8 -> 0.8.9 |
| tcltk | 4.3.2 -> 4.4.1 |
| testthat | 3.2.0 -> 3.2.1.1 |
| tictoc | 1.2 -> 1.2.1 |
| tidymodels | 1.1.1 -> 1.2.0 |
| tidyr | 1.3.0 -> 1.3.1 |
| tidyselect | 1.2.0 -> 1.2.1 |
| tinytex | 0.48 -> 0.51 |
| tools | 4.3.2 -> 4.4.1 |
| Tplyr | 1.1.0 -> 1.2.1 |
| tseries | 0.10-54 -> 0.10-56 |
| usethis | 2.2.2 -> 2.2.3 |
| utils | 4.3.2 -> 4.4.1 |
| vctrs | 0.6.4 -> 0.6.5 |
| viridis | 0.6.4 -> 0.6.5 |
| vroom | 1.6.4 -> 1.6.5 |
| xfun | 0.41 -> 0.45 |
| xgboost | 1.7.5.1 -> 1.7.7.1 |
| XML | 3.99-0.15 -> 3.99-0.16.1 |
| xml2 | 1.3.5 -> 1.3.6 |
| xportr | 0.3.1 -> 0.4.0 |
| xpose | 0.4.17 -> 0.4.18 |
| xpose4 | 4.7.2 -> 4.7.3 |
| xslt | 1.4.4 -> 1.4.5 |
| yaImpute | 1.0-33 -> 1.0-34 |
| yaml | 2.3.7 -> 2.3.8 |
| yardstick | 1.2.0 -> 1.3.1 |
| zip | 2.3.0 -> 2.3.1 |
Removed
- 1 removed package:
| Package Name | Reason |
|---|---|
| psrwe | Package was archived from CRAN on 2023-09-28 as issues were not corrected despite reminders. This led to it being classified as high risk, and as additional tests were implemented, failures occurred, necessitating its removal. |
OpenVal2024.03.01
Release Date: 2024-07-01
“June 2024 Minor Release”
This is a minor release of OpenVal that builds on the March 2024 patch release and includes additional R packages, and an updated package version.
- Total packages: 391
- R version: 4.3.2
- Package snapshot date: 2023-11-20
New
- 36 new packages:
| Package Name | Version |
|---|---|
| anytime | 0.3.9 |
| bizdays | 1.0.13 |
| circlize | 0.4.15 |
| doBy | 4.6.20 |
| e1071 | 1.7-13 |
| factoextra | 1.0.7 |
| fastDummies | 1.7.3 |
| FME | 1.3.6.3 |
| ggdendro | 0.1.23 |
| ggdensity | 1.0.0 |
| ggdist | 3.3.0 |
| ggh4x | 0.2.6 |
| ggsignif | 0.6.4 |
| ggstatsplot | 0.12.1 |
| igraph | 1.5.1 |
| keras | 2.13.0 |
| keyring | 1.3.1 |
| mediation | 4.5.0 |
| mlr3learners | 0.5.6 |
| mlr3mbo | 0.2.1 |
| mlr3pipelines | 0.5.0-1 |
| mlr3tuning | 0.19.0 |
| mlr3viz | 0.6.1 |
| multcomp | 1.4-25 |
| naniar | 1.0.0 |
| pacman | 0.5.1 |
| PopED | 0.6.0 |
| PropCIs | 0.3-0 |
| ROCR | 1.0-11 |
| rpart.plot | 3.1.1 |
| sjPlot | 2.8.15 |
| table1 | 1.4.3 |
| tseries | 0.10-54 |
| vetiver | 0.2.5 |
| vtable | 1.4.6 |
| xpose | 0.4.17 |
Updated
- 1 package with version updates:
| Package Name | Version Old -> New |
|---|---|
| kableExtra | 1.3.4 -> 1.4.0 |
Note: Minor releases do not typically have updated package versions. Package kableExtra was updated to fix a bug with R 4.3.2 that caused an error when the package was loaded within an R markdown file.
OpenVal2024.03.00.01
Release Date: 2024-05-06
“March 2024 Patch Release”
This is a patch release of OpenVal that includes fixes to the March 2024 major release.
- Total packages: 355
- R version: 4.3.2
- Package snapshot date: 2023-11-20
Fixed
CommonJavaJarsdependency package was updated to remove vulnerablelog4.jarfile- Installed Chrome to address dependency in the
pagedown::chrome_print()function
OpenVal2024.03.00
Release Date: 2024-03-29
“March 2024 Major Release”
This is a major release of OpenVal that builds on the January 2024 minor release and includes an updated R version, updated snapshot date, and additional R packages.
- Total packages: 355
- R version: 4.3.2
- Package snapshot date: 2023-11-20
New
- 39 new packages:
| Package Name | Version |
|---|---|
| arm | 1.13-1 |
| arsenal | 3.6.3 |
| aws.s3 | 0.3.21 |
| boa | 1.1.8-2 |
| consort | 1.2.1 |
| cyclocomp | 1.1.1 |
| dictionar6 | 0.1.3 |
| distr6 | 1.6.9 |
| doParallel | 1.0.17 |
| fitdistrplus | 1.1-11 |
| foreach | 1.5.2 |
| fresh | 0.2.0 |
| ggbeeswarm | 0.7.2 |
| ggExtra | 0.10.1 |
| ggnewscale | 0.4.9 |
| ggpattern | 1.0.1 |
| golem | 0.4.1 |
| hardhat | 1.3.0 |
| meta | 6.5-0 |
| metafor | 4.4-0 |
| minpack.lm | 1.2-4 |
| minqa | 1.2.6 |
| nloptr | 2.0.3 |
| param6 | 0.2.4 |
| partykit | 1.2-20 |
| pharmaversesdtm | 0.1.1 |
| powerjoin | 0.1.0 |
| r2rtf | 1.1.1 |
| reactable | 0.4.4 |
| rlist | 0.4.6.2 |
| RODBC | 1.3-21 |
| RPostgreSQL | 0.7-5 |
| set6 | 0.2.4 |
| shinydashboard | 0.7.2 |
| striprtf | 0.6.0 |
| viridis | 0.6.4 |
| xfun | 0.41 |
| xpose4 | 4.7.2 |
| xslt | 1.4.4 |
Updated
- 117 packages with version updates:
| Package Name | Version Old -> New |
|---|---|
| askpass | 1.1 -> 1.2.0 |
| base | 4.2.1 -> 4.3.2 |
| BiocManager | 1.30.21.1 -> 1.30.22 |
| bookdown | 0.34 -> 0.36 |
| brms | 2.19.0 -> 2.20.4 |
| bslib | 0.5.0 -> 0.5.1 |
| Cairo | 1.6-0 -> 1.6-1 |
| cat | 0.0-7 -> 0.0-9 |
| checkmate | 2.2.0 -> 2.3.0 |
| coin | 1.4-2 -> 1.4-3 |
| compiler | 4.2.1 -> 4.3.2 |
| covr | 3.6.2 -> 3.6.4 |
| cpp11 | 0.4.5 -> 0.4.6 |
| credentials | 1.3.2 -> 2.0.1 |
| crosstable | 0.6.2 -> 0.7.0 |
| datasets | 4.2.1 -> 4.3.2 |
| dbplyr | 2.3.3 -> 2.4.0 |
| deSolve | 1.36 -> 1.38 |
| DoseFinding | 1.0-5 -> 1.1-1 |
| dplyr | 1.1.2 -> 1.1.4 |
| DT | 0.28 -> 0.30 |
| emmeans | 1.8.7 -> 1.8.9 |
| epiR | 2.0.62 -> 2.0.65 |
| evaluate | 0.21 -> 0.23 |
| flexdashboard | 0.6.1 -> 0.6.2 |
| flextable | 0.9.2 -> 0.9.4 |
| fontawesome | 0.5.1 -> 0.5.2 |
| foreign | 0.8-84 -> 0.8-85 |
| gdata | 2.19.0 -> 3.0.0 |
| gert | 1.9.2 -> 2.0.0 |
| ggplot2 | 3.4.2 -> 3.4.4 |
| ggpmisc | 0.5.3 -> 0.5.5 |
| ggrepel | 0.9.3 -> 0.9.4 |
| ggsurvfit | 0.3.0 -> 1.0.0 |
| glmnet | 4.1-7 -> 4.1-8 |
| Gmisc | 3.0.2 -> 3.0.3 |
| graphics | 4.2.1 -> 4.3.2 |
| grDevices | 4.2.1 -> 4.3.2 |
| grid | 4.2.1 -> 4.3.2 |
| gt | 0.9.0 -> 0.10.0 |
| gtable | 0.3.3 -> 0.3.4 |
| Hmisc | 5.1-0 -> 5.1-1 |
| htmlTable | 2.4.1 -> 2.4.2 |
| htmltools | 0.5.5 -> 0.5.7 |
| httpuv | 1.6.11 -> 1.6.12 |
| httr | 1.4.6 -> 1.4.7 |
| knitr | 1.43 -> 1.45 |
| lattice | 0.21-8 -> 0.22-5 |
| lemon | 0.4.6 -> 0.4.7 |
| lifecycle | 1.0.3 -> 1.0.4 |
| lintr | 3.1.0 -> 3.1.1 |
| lme4 | 1.1-34 -> 1.1-35.1 |
| logrx | 0.2.2 -> 0.3.0 |
| lubridate | 1.9.2 -> 1.9.3 |
| maftools | 2.14.0 -> 2.18.0 |
| markdown | 1.7 -> 1.11 |
| Matrix | 1.6-0 -> 1.6-3 |
| methods | 4.2.1 -> 4.3.2 |
| mirt | 1.39 -> 1.41 |
| mlr3 | 0.16.1 -> 0.17.0 |
| mmrm | 0.2.2 -> 0.3.6 |
| mockery | 0.4.3 -> 0.4.4 |
| mvtnorm | 1.2-2 -> 1.2-3 |
| nlme | 3.1-162 -> 3.1-163 |
| officer | 0.6.2 -> 0.6.3 |
| parallel | 4.2.1 -> 4.3.2 |
| patchwork | 1.1.2 -> 1.1.3 |
| pkgload | 1.3.2.1 -> 1.3.3 |
| plotly | 4.10.2 -> 4.10.3 |
| plotrix | 3.8-2 -> 3.8-4 |
| plyr | 1.8.8 -> 1.8.9 |
| PMCMRplus | 1.9.7 -> 1.9.8 |
| prettyunits | 1.1.1 -> 1.2.0 |
| promises | 1.2.0.1 -> 1.2.1 |
| psych | 2.3.6 -> 2.3.9 |
| purrr | 1.0.1 -> 1.0.2 |
| quarto | 1.2 -> 1.3 |
| R.utils | 2.12.2 -> 2.12.3 |
| ragg | 1.2.5 -> 1.2.6 |
| ranger | 0.15.1 -> 0.16.0 |
| raster | 3.6-23 -> 3.6-26 |
| rbmi | 1.2.3 -> 1.2.5 |
| rcompanion | 2.4.30 -> 2.4.34 |
| RcppArmadillo | 0.12.4.1.0 -> 0.12.6.6.0 |
| rematch | 1.0.1 -> 2.0.0 |
| reticulate | 1.30 -> 1.34.0 |
| rlang | 1.1.1 -> 1.1.2 |
| rmarkdown | 2.23 -> 2.25 |
| rpart | 4.1.19 -> 4.1.21 |
| rprojroot | 2.0.3 -> 2.0.4 |
| rsconnect | 1.0.1 -> 1.1.1 |
| rstan | 2.21.8 -> 2.32.3 |
| runjags | 2.2.2-1 -> 2.2.2-1.1 |
| rxode2 | 2.0.13 -> 2.0.14 |
| shapviz | 0.9.1 -> 0.9.2 |
| shiny | 1.7.4.1 -> 1.8.0 |
| splines | 4.2.1 -> 4.3.2 |
| stats | 4.2.1 -> 4.3.2 |
| stats4 | 4.2.1 -> 4.3.2 |
| stringi | 1.7.12 -> 1.8.1 |
| stringr | 1.5.0 -> 1.5.1 |
| styler | 1.10.1 -> 1.10.2 |
| survival | 3.5-5 -> 3.5-7 |
| svglite | 2.1.1 -> 2.1.2 |
| tcltk | 4.2.1 -> 4.3.2 |
| testthat | 3.1.10 -> 3.2.0 |
| tidymodels | 1.1.0 -> 1.1.1 |
| tinytex | 0.45 -> 0.48 |
| tools | 4.2.1 -> 4.3.2 |
| utils | 4.2.1 -> 4.3.2 |
| vctrs | 0.6.3 -> 0.6.4 |
| vdiffr | 1.0.5 -> 1.0.7 |
| vip | 0.4.0 -> 0.4.1 |
| vroom | 1.6.3 -> 1.6.4 |
| withr | 2.5.0 -> 2.5.2 |
| XML | 3.99-0.14 -> 3.99-0.15 |
| xportr | 0.3.0 -> 0.3.1 |
OpenVal2023.09.02
Release Date: 2024-01-31
“January 2024 Minor Release”
This is a minor release of OpenVal that builds on the December 2023 minor release and includes an additional feature and a fix.
- Total packages: 316
- R version: 4.2.1
- Package snapshot date: 2023-07-31
New
- New installation verification function
Fixed
- Updated Validation Report for inconsistencies in package versions between the Risk Assessment and the Validation Assessment sections
OpenVal2023.09.01
Release Date: 2023-12-29
“December 2023 Minor Release”
This is a minor release of OpenVal that builds on the September 2023 major release and includes additional R packages.
- Total packages: 316
- R version: 4.2.1
- Package snapshot date: 2023-07-31
New
- 53 new packages:
| Package Name | Version |
|---|---|
| assertive | 0.3-6 |
| censored | 0.2.0 |
| DALEX | 2.4.3 |
| depmixS4 | 1.5-0 |
| doFuture | 1.0.0 |
| doRNG | 1.8.6 |
| emojifont | 0.5.5 |
| extraDistr | 1.9.1 |
| flexdashboard | 0.6.1 |
| flexsurv | 2.2.2 |
| gemtc | 1.0-2 |
| GGally | 2.1.2 |
| ggalt | 0.4.0 |
| gganimate | 1.0.8 |
| ggcharts | 0.2.1 |
| ggforce | 0.4.1 |
| ggPMX | 1.2.10 |
| ggthemes | 4.2.4 |
| Gmisc | 3.0.2 |
| gridtext | 0.1.5 |
| Hmisc | 5.1-0 |
| hrbrthemes | 0.8.0 |
| iml | 0.11.1 |
| jpeg | 0.1-10 |
| labelled | 2.12.0 |
| lotri | 0.4.3 |
| mirt | 1.39 |
| mlr3 | 0.16.1 |
| pagedown | 0.2 |
| pander | 0.6.5 |
| PMCMRplus | 1.9.7 |
| pscl | 1.5.5.1 |
| qs | 0.25.5 |
| randomForest | 4.7-1.1 |
| randomForestExplainer | 0.10.1 |
| randomForestSRC | 3.2.2 |
| ranger | 0.15.1 |
| RcppArmadillo | 0.12.4.1.0 |
| Rmpi | 0.7-1 |
| rstan | 2.21.8 |
| runjags | 2.2.2-1 |
| rxode2 | 2.0.13 |
| shapviz | 0.9.1 |
| sjlabelled | 1.2.0 |
| skimr | 2.1.5 |
| slickR | 0.6.0 |
| splitstackshape | 1.4.8 |
| survminer | 0.4.9 |
| tidymodels | 1.1.0 |
| vip | 0.4.0 |
| xgboost | 1.7.5.1 |
| xtable | 1.8-4 |
| yaImpute | 1.0-33 |
OpenVal2023.09.00
Release Date: 2023-10-11
“September 2023 Major Release”
- Total packages: 263
- R version: 4.2.1
- Package snapshot date: 2023-07-31